Gm57133 Gene Detail

Summary

• Symbol
  Gm57133
• Name
  predicted gene, 57133

• Feature Type
  lncRNA gene
• IDs
  MGI:7338179
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:129703647-129704904 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  38 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338179	lncRNA gene	Chr4:129703647-129704904 (-)
129S1/SvImJ	ENSMUSG00200021413	lncRNA gene	Chr4:123145156-123145626 (-)
A/J	ENSMUSG00195045887	lncRNA gene	Chr4:124479015-124479485 (-)
AKR/J	ENSMUSG00220048561	lncRNA gene	Chr4:123470774-123471244 (-)
BALB/cJ	ENSMUSG00180050047	lncRNA gene	Chr4:122112713-122113183 (-)
C3H/HeJ	ENSMUSG00175048439	lncRNA gene	Chr4:123125289-123125759 (-)
C57BL/6NJ	ENSMUSG00215052710	lncRNA gene	Chr4:124628638-124629106 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048130	lncRNA gene	Chr4:124008534-124008997 (-)
CBA/J	ENSMUSG00210053925	lncRNA gene	Chr4:122754309-122754779 (-)
DBA/2J	ENSMUSG00185052674	lncRNA gene	Chr4:124286658-124287128 (-)
FVB/NJ	ENSMUSG00205048860	lncRNA gene	Chr4:122513284-122513753 (-)
JF1/MsJ	ENSUMUG00000046801	lncRNA gene	Chr4:124931680-124932148 (-)
LP/J	ENSMUSG00230038717	lncRNA gene	Chr4:128082578-128083048 (-)
NOD/ShiLtJ	ENSMUSG00190050164	lncRNA gene	Chr4:122518681-122519151 (-)
NZO/HlLtJ	ENSMUSG00225026649	lncRNA gene	Chr4:133997560-133998030 (-)
PWK/PhJ	ENSLUMG00010049796	lncRNA gene	Chr4:121969017-121969485 (-)
SPRET/EiJ	ENSMSPG00010045495	lncRNA gene	Chr4:124038591-124039057 (-)
WSB/EiJ	ENSIUOG00005046382	lncRNA gene	Chr4:122381046-122381516 (-)

Homology

• Gene Tree
  Gm57133
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121033 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121033	Ensembl Gene Model | MGI Sequence Detail	1258	C57BL/6J
transcript	ENSMUST00000246945	Ensembl | MGI Sequence Detail	1258	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57133:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr43565	Chr4:129704766-129704780 (-)	131 bp
Tssr43564	Chr4:129704701-129704712 (-)	197 bp