Gm57130 Gene Detail

Summary

• Symbol
  Gm57130
• Name
  predicted gene, 57130

• Feature Type
  lncRNA gene
• IDs
  MGI:7338173
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:135058971-135059736 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  89 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338173	lncRNA gene	Chr1:135058971-135059736 (+)
129S1/SvImJ	ENSMUSG00200008616	lncRNA gene	Chr1:132672788-132673094 (+)
A/J	ENSMUSG00195044773	lncRNA gene	Chr1:131747416-131747722 (+)
AKR/J	ENSMUSG00220050627	lncRNA gene	Chr1:131625320-131625626 (+)
BALB/cJ	ENSMUSG00180039189	lncRNA gene	Chr1:132286853-132287159 (+)
C3H/HeJ	ENSMUSG00175047620	lncRNA gene	Chr1:131991591-131991897 (+)
C57BL/6NJ	ENSMUSG00215045654	lncRNA gene	Chr1:131988614-131988920 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039599	lncRNA gene	Chr1:130909370-130909676 (+)
CBA/J	ENSMUSG00210028368	lncRNA gene	Chr1:131922009-131922315 (+)
DBA/2J	ENSMUSG00185033071	lncRNA gene	Chr1:136296516-136296822 (+)
FVB/NJ	ENSMUSG00205046109	lncRNA gene	Chr1:131257687-131257993 (+)
JF1/MsJ	ENSUMUG00000051255	lncRNA gene	Chr1:135419862-135420168 (+)
LP/J	ENSMUSG00230040012	lncRNA gene	Chr1:135821599-135821905 (+)
NOD/ShiLtJ	ENSMUSG00190047595	lncRNA gene	Chr1:131936115-131936421 (+)
NZO/HlLtJ	ENSMUSG00225021961	lncRNA gene	Chr1:139587450-139587756 (+)
PWK/PhJ	ENSLUMG00010029321	lncRNA gene	Chr1:131044753-131045059 (+)
SPRET/EiJ	ENSMSPG00010012223	lncRNA gene	Chr1:133846826-133847132 (+)
WSB/EiJ	ENSIUOG00005048193	lncRNA gene	Chr1:131679433-131679739 (+)

Homology

• Gene Tree
  Gm57130
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120719 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120719	Ensembl Gene Model | MGI Sequence Detail	766	C57BL/6J
transcript	ENSMUST00000245403	Ensembl | MGI Sequence Detail	766	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57130:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8928	Chr1:135058978-135058996 (+)	16 bp
Tssr8929	Chr1:135059011-135059044 (+)	57 bp
Tssr8930	Chr1:135059547-135059597 (+)	601 bp