Gm57129 Gene Detail

Summary

• Symbol
  Gm57129
• Name
  predicted gene, 57129

• Feature Type
  lncRNA gene
• IDs
  MGI:7338171
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:86369482-86370360 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  94 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338171	lncRNA gene	Chr1:86369482-86370360 (-)
129S1/SvImJ	ENSMUSG00200039128	lncRNA gene	Chr1:83585534-83586047 (-)
A/J	ENSMUSG00195034701	lncRNA gene	Chr1:83157820-83158333 (-)
AKR/J	ENSMUSG00220045763	lncRNA gene	Chr1:83281043-83281557 (-)
BALB/cJ	ENSMUSG00180019229	lncRNA gene	Chr1:83456992-83457506 (-)
C3H/HeJ	ENSMUSG00175001472	lncRNA gene	Chr1:83336654-83337167 (-)
C57BL/6NJ	ENSMUSG00215032320	lncRNA gene	Chr1:83258781-83259295 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007974	lncRNA gene	Chr1:82912554-82913060 (-)
CBA/J	ENSMUSG00210012517	lncRNA gene	Chr1:83181277-83181791 (-)
DBA/2J	ENSMUSG00185017609	lncRNA gene	Chr1:87653146-87653660 (-)
FVB/NJ	ENSMUSG00205044512	lncRNA gene	Chr1:82592411-82592924 (-)
JF1/MsJ	ENSUMUG00000018982	lncRNA gene	Chr1:86429329-86429846 (-)
LP/J	ENSMUSG00230022853	lncRNA gene	Chr1:86931456-86931969 (-)
NOD/ShiLtJ	ENSMUSG00190036692	lncRNA gene	Chr1:83236374-83236888 (-)
NZO/HlLtJ	ENSMUSG00225004917	lncRNA gene	Chr1:90834266-90834779 (-)
PWK/PhJ	ENSLUMG00010046404	lncRNA gene	Chr1:82806051-82806568 (-)
SPRET/EiJ	ENSMSPG00010047865	lncRNA gene	Chr1:84810839-84811356 (-)
WSB/EiJ	ENSIUOG00005044211	lncRNA gene	Chr1:82839155-82839669 (-)

Homology

• Gene Tree
  Gm57129
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120706 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120706	Ensembl Gene Model | MGI Sequence Detail	879	C57BL/6J
transcript	ENSMUST00000245353	Ensembl | MGI Sequence Detail	879	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57129:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr12797	Chr1:86370260-86370276 (-)	92 bp
Tssr12796	Chr1:86370202-86370213 (-)	152 bp