Gm57124 Gene Detail

Summary

• Symbol
  Gm57124
• Name
  predicted gene, 57124

• Feature Type
  lncRNA gene
• IDs
  MGI:7338161
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:99537949-99542840 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338161	lncRNA gene	Chr4:99537949-99542840 (+)
129S1/SvImJ	ENSMUSG00200031461	lncRNA gene	Chr4:94521694-94523176 (+)
A/J	ENSMUSG00195008396	lncRNA gene	Chr4:95060654-95062145 (+)
AKR/J	ENSMUSG00220006550	lncRNA gene	Chr4:94525307-94526799 (+)
BALB/cJ	ENSMUSG00180035511	lncRNA gene	Chr4:94005994-94007486 (+)
C3H/HeJ	ENSMUSG00175015169	lncRNA gene	Chr4:94968183-94969674 (+)
C57BL/6NJ	ENSMUSG00215019038	lncRNA gene	Chr4:94912460-94913953 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007433	lncRNA gene	Chr4:94219706-94221194 (+)
CBA/J	ENSMUSG00210029495	lncRNA gene	Chr4:94533700-94535191 (+)
DBA/2J	ENSMUSG00185022896	lncRNA gene	Chr4:95308942-95310433 (+)
FVB/NJ	ENSMUSG00205016659	lncRNA gene	Chr4:93520893-93522384 (+)
JF1/MsJ	ENSUMUG00000041525	lncRNA gene	Chr4:95421173-95422662 (+)
LP/J	ENSMUSG00230022916	lncRNA gene	Chr4:98631147-98632629 (+)
NOD/ShiLtJ	ENSMUSG00190034228	lncRNA gene	Chr4:93994474-93995956 (+)
NZO/HlLtJ	ENSMUSG00225033224	lncRNA gene	Chr4:103759409-103760905 (+)
PWK/PhJ	ENSLUMG00010018499	lncRNA gene	Chr4:93123265-93124753 (+)
SPRET/EiJ	ENSMSPG00010008681	lncRNA gene	Chr4:95354895-95356380 (+)
WSB/EiJ	ENSIUOG00005003062	lncRNA gene	Chr4:94308886-94310377 (+)

Homology

• Gene Tree
  Gm57124
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  29

• Ensembl
  ENSMUSG00000120311 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120311	Ensembl Gene Model | MGI Sequence Detail	4892	C57BL/6J
transcript	ENSMUST00000254047	Ensembl | MGI Sequence Detail	1244	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57124:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37935	Chr4:99538672-99538689 (+)	732 bp