Gm57120 Gene Detail

Summary

• Symbol
  Gm57120
• Name
  predicted gene, 57120

• Feature Type
  lncRNA gene
• IDs
  MGI:7338153
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:163830161-163914632 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2595 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338153	lncRNA gene	Chr1:163830161-163914632 (-)
129S1/SvImJ	ENSMUSG00200007684	lncRNA gene	Chr1:161300857-161319088 (-)
A/J	ENSMUSG00195023344	lncRNA gene	Chr1:160641089-160659319 (-)
AKR/J	ENSMUSG00220014783	lncRNA gene	Chr1:160421736-160439948 (-)
BALB/cJ	ENSMUSG00180041543	lncRNA gene	Chr1:160883008-160901243 (-)
C3H/HeJ	ENSMUSG00175048078	lncRNA gene	Chr1:160973668-160991898 (-)
C57BL/6NJ	ENSMUSG00215040768	lncRNA gene	Chr1:160850870-160869102 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022659	lncRNA gene	Chr1:159438033-159464811 (-)
CBA/J	ENSMUSG00210021831	lncRNA gene	Chr1:160846286-160864516 (-)
DBA/2J	ENSMUSG00185012205	lncRNA gene	Chr1:165091784-165109774 (-)
FVB/NJ	ENSMUSG00205010699	lncRNA gene	Chr1:159925211-159943368 (-)
JF1/MsJ	ENSUMUG00000012693	lncRNA gene	Chr1:164241979-164259950 (-)
LP/J	ENSMUSG00230026248	lncRNA gene	Chr1:164711289-164729519 (-)
NOD/ShiLtJ	ENSMUSG00190044830	lncRNA gene	Chr1:160687739-160705898 (-)
NZO/HlLtJ	ENSMUSG00225004600	lncRNA gene	Chr1:168304897-168323056 (-)
PWK/PhJ	ENSLUMG00010045520	lncRNA gene	Chr1:159631439-159649730 (-)
SPRET/EiJ	ENSMSPG00010045774	lncRNA gene	Chr1:163114789-163133240 (-)
WSB/EiJ	ENSIUOG00005016959	lncRNA gene	Chr1:160191385-160209533 (-)

Homology

• Gene Tree
  Gm57120
  

Sequences &
Gene Models

• All Sequences
  33

• Ensembl
  ENSMUSG00000120445 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120445	Ensembl Gene Model | MGI Sequence Detail	84472	C57BL/6J
transcript	ENSMUST00000287212	Ensembl | MGI Sequence Detail	2393	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57120:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr14723	Chr1:163914480-163914491 (-)	146 bp
Tssr14722	Chr1:163890566-163890577 (-)	24,060 bp
Tssr14721	Chr1:163848557-163848581 (-)	66,063 bp