Gm57117 Gene Detail

Summary

• Symbol
  Gm57117
• Name
  predicted gene, 57117

• Feature Type
  lncRNA gene
• IDs
  MGI:7338147
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:43971365-43973502 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338147	lncRNA gene	Chr1:43971365-43973502 (-)
129S1/SvImJ	ENSMUSG00200002125	lncRNA gene	Chr1:41600797-41602125 (-)
A/J	ENSMUSG00195001988	lncRNA gene	Chr1:41308252-41309580 (-)
AKR/J	ENSMUSG00220004006	lncRNA gene	Chr1:41305769-41307097 (-)
BALB/cJ	ENSMUSG00180003473	lncRNA gene	Chr1:41316858-41318186 (-)
C3H/HeJ	ENSMUSG00175000152	lncRNA gene	Chr1:41315925-41317253 (-)
C57BL/6NJ	ENSMUSG00215003116	lncRNA gene	Chr1:41291971-41293299 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210029843	lncRNA gene	Chr1:41067478-41068806 (-)
DBA/2J	ENSMUSG00185030968	lncRNA gene	Chr1:42168648-42169976 (-)
FVB/NJ	ENSMUSG00205003825	lncRNA gene	Chr1:41253639-41254967 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230001483	lncRNA gene	Chr1:42202441-42203769 (-)
NOD/ShiLtJ	ENSMUSG00190002675	lncRNA gene	Chr1:41279353-41280681 (-)
NZO/HlLtJ	ENSMUSG00225001104	lncRNA gene	Chr1:45437564-45438892 (-)
PWK/PhJ	ENSLUMG00010002783	lncRNA gene	Chr1:40890808-40892137 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005003802	lncRNA gene	Chr1:41253255-41254583 (-)

Homology

• Gene Tree
  Gm57117
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120105 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120105	Ensembl Gene Model | MGI Sequence Detail	2138	C57BL/6J
transcript	ENSMUST00000241405	Ensembl | MGI Sequence Detail	2138	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57117:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11507	Chr1:43972997-43973074 (-)	466 bp