Gm57116 Gene Detail

Summary

• Symbol
  Gm57116
• Name
  predicted gene, 57116

• Feature Type
  lncRNA gene
• IDs
  MGI:7338145
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:191660653-191662347 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  149 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338145	lncRNA gene	Chr1:191660653-191662347 (+)
129S1/SvImJ	ENSMUSG00200004929	lncRNA gene	Chr1:189442514-189444130 (+)
A/J	ENSMUSG00195008948	lncRNA gene	Chr1:189021902-189023518 (+)
AKR/J	ENSMUSG00220005030	lncRNA gene	Chr1:188265761-188267377 (+)
BALB/cJ	ENSMUSG00180019191	lncRNA gene	Chr1:189087353-189088969 (+)
C3H/HeJ	ENSMUSG00175022331	lncRNA gene	Chr1:189275260-189276876 (+)
C57BL/6NJ	ENSMUSG00215021940	lncRNA gene	Chr1:188493586-188495202 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002136	lncRNA gene	Chr1:187057617-187059233 (+)
CBA/J	ENSMUSG00210003638	lncRNA gene	Chr1:188937559-188939175 (+)
DBA/2J	ENSMUSG00185011184	lncRNA gene	Chr1:193550833-193552449 (+)
FVB/NJ	ENSMUSG00205005117	lncRNA gene	Chr1:187933357-187934973 (+)
JF1/MsJ	ENSUMUG00000010034	lncRNA gene	Chr1:192532019-192533569 (+)
LP/J	ENSMUSG00230025496	lncRNA gene	Chr1:193086144-193087760 (+)
NOD/ShiLtJ	ENSMUSG00190036661	lncRNA gene	Chr1:188913186-188914802 (+)
NZO/HlLtJ	ENSMUSG00225016830	lncRNA gene	Chr1:196838396-196840012 (+)
PWK/PhJ	ENSLUMG00010006690	lncRNA gene	Chr1:187769781-187771397 (+)
SPRET/EiJ	ENSMSPG00010026586	lncRNA gene	Chr1:191308769-191310325 (+)
WSB/EiJ	ENSIUOG00005004702	lncRNA gene	Chr1:188275872-188277488 (+)

Homology

• Gene Tree
  Gm57116
  

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000120472 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120472	Ensembl Gene Model | MGI Sequence Detail	1695	C57BL/6J
transcript	ENSMUST00000338680	Ensembl | MGI Sequence Detail	1628	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;