Gm57114 Gene Detail

Summary

• Symbol
  Gm57114
• Name
  predicted gene, 57114

• Feature Type
  lncRNA gene
• IDs
  MGI:7338141
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr1:133592153-133604898 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  381 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338141	lncRNA gene	Chr1:133592153-133604898 (+)
129S1/SvImJ	ENSMUSG00200008984	lncRNA gene	Chr1:131200032-131200556 (+)
A/J	ENSMUSG00195046128	lncRNA gene	Chr1:130274232-130274756 (+)
AKR/J	ENSMUSG00220050306	lncRNA gene	Chr1:130144215-130144739 (+)
BALB/cJ	ENSMUSG00180039507	lncRNA gene	Chr1:130822372-130822896 (+)
C3H/HeJ	ENSMUSG00175045745	lncRNA gene	Chr1:130518603-130519127 (+)
C57BL/6NJ	ENSMUSG00215045710	lncRNA gene	Chr1:130524054-130524578 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039557	lncRNA gene	Chr1:129432931-129433455 (+)
CBA/J	ENSMUSG00210028696	lncRNA gene	Chr1:130439683-130440207 (+)
DBA/2J	ENSMUSG00185034968	lncRNA gene	Chr1:134810984-134811508 (+)
FVB/NJ	ENSMUSG00205045543	lncRNA gene	Chr1:129776198-129776722 (+)
JF1/MsJ	ENSUMUG00000053079	lncRNA gene	Chr1:133960305-133960829 (+)
LP/J	ENSMUSG00230039164	lncRNA gene	Chr1:134357362-134357886 (+)
NOD/ShiLtJ	ENSMUSG00190048146	lncRNA gene	Chr1:130453888-130454412 (+)
NZO/HlLtJ	ENSMUSG00225021472	lncRNA gene	Chr1:138110657-138111181 (+)
PWK/PhJ	ENSLUMG00010028081	lncRNA gene	Chr1:129590385-129590909 (+)
SPRET/EiJ	ENSMSPG00010045759	lncRNA gene	Chr1:132389865-132389982 (+)
WSB/EiJ	ENSIUOG00005048005	lncRNA gene	Chr1:130192002-130192526 (+)

Homology

• Gene Tree
  Gm57114
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000120455 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120455	Ensembl Gene Model | MGI Sequence Detail	12746	C57BL/6J
transcript	ENSMUST00000360144	Ensembl | MGI Sequence Detail	1686	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57114:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8819	Chr1:133592148-133592157 (+)	0 bp
Tssr8820	Chr1:133592158-133592180 (+)	16 bp
Tssr8821	Chr1:133592182-133592202 (+)	39 bp
Tssr8822	Chr1:133595745-133595763 (+)	3,601 bp