Gm57107 Gene Detail

Summary

• Symbol
  Gm57107
• Name
  predicted gene, 57107

• Feature Type
  lncRNA gene
• IDs
  MGI:7338127
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:134271156-134272454 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  93 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338127	lncRNA gene	Chr1:134271156-134272454 (-)
129S1/SvImJ	ENSMUSG00200009536	lncRNA gene	Chr1:131870013-131871311 (-)
A/J	ENSMUSG00195046169	lncRNA gene	Chr1:130949157-130950455 (-)
AKR/J	ENSMUSG00220051152	lncRNA gene	Chr1:130814685-130815983 (-)
BALB/cJ	ENSMUSG00180040651	lncRNA gene	Chr1:131498493-131499791 (-)
C3H/HeJ	ENSMUSG00175047849	lncRNA gene	Chr1:131193409-131194707 (-)
C57BL/6NJ	ENSMUSG00215046210	lncRNA gene	Chr1:131200166-131201464 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039237	lncRNA gene	Chr1:130106869-130108168 (-)
CBA/J	ENSMUSG00210028195	lncRNA gene	Chr1:131120368-131121666 (-)
DBA/2J	ENSMUSG00185035038	lncRNA gene	Chr1:135481425-135482723 (-)
FVB/NJ	ENSMUSG00205044336	lncRNA gene	Chr1:130446693-130447991 (-)
JF1/MsJ	ENSUMUG00000050882	lncRNA gene	Chr1:134635740-134637039 (-)
LP/J	ENSMUSG00230039170	lncRNA gene	Chr1:135033361-135034659 (-)
NOD/ShiLtJ	ENSMUSG00190047384	lncRNA gene	Chr1:131134494-131135792 (-)
NZO/HlLtJ	ENSMUSG00225021484	lncRNA gene	Chr1:138789282-138790580 (-)
PWK/PhJ	ENSLUMG00010029622	lncRNA gene	Chr1:130261215-130262514 (-)
SPRET/EiJ	ENSMSPG00010046830	lncRNA gene	Chr1:133059098-133060397 (-)
WSB/EiJ	ENSIUOG00005048219	lncRNA gene	Chr1:130872859-130874157 (-)

Homology

• Gene Tree
  Gm57107
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120099 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120099	Ensembl Gene Model | MGI Sequence Detail	1299	C57BL/6J
transcript	ENSMUST00000241359	Ensembl | MGI Sequence Detail	1299	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57107:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr13791	Chr1:134272395-134272467 (-)	23 bp