Gm57102 Gene Detail

Summary

• Symbol
  Gm57102
• Name
  predicted gene, 57102

• Feature Type
  lncRNA gene
• IDs
  MGI:7338117
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:46649972-46650846 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  105 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338117	lncRNA gene	Chr4:46649972-46650846 (+)
129S1/SvImJ	ENSMUSG00200003367	lncRNA gene	Chr4:42699642-42700204 (+)
A/J	ENSMUSG00195006713	lncRNA gene	Chr4:43142986-43143548 (+)
AKR/J	ENSMUSG00220002976	lncRNA gene	Chr4:42852574-42853136 (+)
BALB/cJ	ENSMUSG00180031163	lncRNA gene	Chr4:42729658-42730220 (+)
C3H/HeJ	ENSMUSG00175021591	lncRNA gene	Chr4:42879062-42879624 (+)
C57BL/6NJ	ENSMUSG00215025890	lncRNA gene	Chr4:42675762-42676324 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039267	lncRNA gene	Chr4:42917542-42918104 (+)
CBA/J	ENSMUSG00210019577	lncRNA gene	Chr4:42576700-42577262 (+)
DBA/2J	ENSMUSG00185034400	lncRNA gene	Chr4:42940127-42940689 (+)
FVB/NJ	ENSMUSG00205025225	lncRNA gene	Chr4:42238138-42238700 (+)
JF1/MsJ	ENSUMUG00000037989	lncRNA gene	Chr4:43148586-43149145 (+)
LP/J	ENSMUSG00230042910	lncRNA gene	Chr4:46500597-46501159 (+)
NOD/ShiLtJ	ENSMUSG00190026772	lncRNA gene	Chr4:42810598-42811160 (+)
NZO/HlLtJ	ENSMUSG00225007042	lncRNA gene	Chr4:51103358-51103920 (+)
PWK/PhJ	ENSLUMG00010013209	lncRNA gene	Chr4:42162441-42163003 (+)
SPRET/EiJ	ENSMSPG00010009658	lncRNA gene	Chr4:43082146-43082708 (+)
WSB/EiJ	ENSIUOG00005004416	lncRNA gene	Chr4:42542892-42543454 (+)

Homology

• Gene Tree
  Gm57102
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120662 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120662	Ensembl Gene Model | MGI Sequence Detail	875	C57BL/6J
transcript	ENSMUST00000244996	Ensembl | MGI Sequence Detail	875	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57102:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37143	Chr4:46650271-46650317 (+)	322 bp