Gm57099 Gene Detail

Summary

• Symbol
  Gm57099
• Name
  predicted gene, 57099

• Feature Type
  lncRNA gene
• IDs
  MGI:7338111
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:22486841-22487289 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  51 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338111	lncRNA gene	Chr4:22486841-22487289 (+)
129S1/SvImJ	ENSMUSG00200001316	lncRNA gene	Chr4:19184709-19185047 (+)
A/J	ENSMUSG00195016801	lncRNA gene	Chr4:19664392-19664730 (+)
AKR/J	ENSMUSG00220001380	lncRNA gene	Chr4:19399228-19399566 (+)
BALB/cJ	ENSMUSG00180001921	lncRNA gene	Chr4:19141898-19142236 (+)
C3H/HeJ	ENSMUSG00175018499	lncRNA gene	Chr4:19642110-19642448 (+)
C57BL/6NJ	ENSMUSG00215011221	lncRNA gene	Chr4:19266354-19266692 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016447	lncRNA gene	Chr4:19249884-19250222 (+)
CBA/J	ENSMUSG00210001787	lncRNA gene	Chr4:19351361-19351699 (+)
DBA/2J	ENSMUSG00185001286	lncRNA gene	Chr4:19457802-19458140 (+)
FVB/NJ	ENSMUSG00205001936	lncRNA gene	Chr4:18976780-18977118 (+)
JF1/MsJ	ENSUMUG00000001773	lncRNA gene	Chr4:19456343-19456681 (+)
LP/J	ENSMUSG00230000612	lncRNA gene	Chr4:22724772-22725110 (+)
NOD/ShiLtJ	ENSMUSG00190025395	lncRNA gene	Chr4:19368868-19369206 (+)
NZO/HlLtJ	ENSMUSG00225001918	lncRNA gene	Chr4:26680613-26680951 (+)
PWK/PhJ	ENSLUMG00010001955	lncRNA gene	Chr4:18925442-18925780 (+)
SPRET/EiJ	ENSMSPG00010013439	lncRNA gene	Chr4:19469580-19469918 (+)
WSB/EiJ	ENSIUOG00005008504	lncRNA gene	Chr4:19092401-19092739 (+)

Homology

• Gene Tree
  Gm57099
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120708 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120708	Ensembl Gene Model | MGI Sequence Detail	449	C57BL/6J
transcript	ENSMUST00000245361	Ensembl | MGI Sequence Detail	449	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57099:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36632	Chr4:22486940-22486952 (+)	105 bp