Gm57098 Gene Detail

Summary

• Symbol
  Gm57098
• Name
  predicted gene, 57098

• Feature Type
  lncRNA gene
• IDs
  MGI:7338109
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr4:8911956-8947053 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  943 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338109	lncRNA gene	Chr4:8911956-8947053 (+)
129S1/SvImJ	ENSMUSG00200001456	lncRNA gene	Chr4:5549564-5553871 (+)
A/J	ENSMUSG00195002839	lncRNA gene	Chr4:5966292-5970600 (+)
AKR/J	ENSMUSG00220001397	lncRNA gene	Chr4:5752941-5757247 (+)
BALB/cJ	ENSMUSG00180004602	lncRNA gene	Chr4:5535141-5539451 (+)
C3H/HeJ	ENSMUSG00175017392	lncRNA gene	Chr4:6057734-6062039 (+)
C57BL/6NJ	ENSMUSG00215004582	lncRNA gene	Chr4:5680161-5684469 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026226	lncRNA gene	Chr4:5776401-5780689 (+)
CBA/J	ENSMUSG00210002651	lncRNA gene	Chr4:5798683-5802986 (+)
DBA/2J	ENSMUSG00185002662	lncRNA gene	Chr4:5918088-5922391 (+)
FVB/NJ	ENSMUSG00205003698	lncRNA gene	Chr4:5569160-5573464 (+)
JF1/MsJ	ENSUMUG00000002851	lncRNA gene	Chr4:6014035-6018325 (+)
LP/J	ENSMUSG00230008595	lncRNA gene	Chr4:9085230-9089533 (+)
NOD/ShiLtJ	ENSMUSG00190014373	lncRNA gene	Chr4:5617253-5621563 (+)
NZO/HlLtJ	ENSMUSG00225008399	lncRNA gene	Chr4:13091845-13096138 (+)
PWK/PhJ	ENSLUMG00010005812	lncRNA gene	Chr4:5508281-5512579 (+)
SPRET/EiJ	ENSMSPG00010003044	lncRNA gene	Chr4:5817323-5821640 (+)
WSB/EiJ	ENSIUOG00005014565	lncRNA gene	Chr4:5564651-5568972 (+)

Homology

• Gene Tree
  Gm57098
  

Sequences &
Gene Models

• All Sequences
  31

• Ensembl
  ENSMUSG00000120700 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120700	Ensembl Gene Model | MGI Sequence Detail	35098	C57BL/6J
transcript	ENSMUST00000287156	Ensembl | MGI Sequence Detail	2167	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57098:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36448	Chr4:8913007-8913018 (+)	1,057 bp
Tssr36449	Chr4:8913019-8913029 (+)	1,068 bp
Tssr36450	Chr4:8913812-8913846 (+)	1,873 bp
Tssr36451	Chr4:8915755-8915791 (+)	3,817 bp
Tssr1118	Chr4:8939228-8939239 (+)	27,278 bp