Gm57096 Gene Detail

Summary

• Symbol
  Gm57096
• Name
  predicted gene, 57096

• Feature Type
  lncRNA gene
• IDs
  MGI:7338105
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:144578047-144627544 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  971 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338105	lncRNA gene	Chr4:144578047-144627544 (-)
129S1/SvImJ	ENSMUSG00200047768	lncRNA gene	Chr4:137752223-137795146 (-)
A/J	ENSMUSG00195035537	lncRNA gene	Chr4:139336542-139377387 (-)
AKR/J	ENSMUSG00220048461	lncRNA gene	Chr4:138051248-138092096 (-)
BALB/cJ	ENSMUSG00180048720	lncRNA gene	Chr4:137017256-137058099 (-)
C3H/HeJ	ENSMUSG00175043384	lncRNA gene	Chr4:138004318-138045165 (-)
C57BL/6NJ	ENSMUSG00215051132	lncRNA gene	Chr4:139375604-139416447 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014411	lncRNA gene	Chr4:139156554-139177992 (-)
CBA/J	ENSMUSG00210029520	lncRNA gene	Chr4:137606971-137647818 (-)
DBA/2J	ENSMUSG00185052418	lncRNA gene	Chr4:139313834-139335237 (-)
FVB/NJ	ENSMUSG00205044710	lncRNA gene	Chr4:136885495-136906878 (-)
JF1/MsJ	ENSUMUG00000049853	lncRNA gene	Chr4:139709113-139749962 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190038151	lncRNA gene	Chr4:137214328-137235711 (-)
NZO/HlLtJ	ENSMUSG00225010232	lncRNA gene	Chr4:148856472-148897317 (-)
PWK/PhJ	ENSLUMG00010048462	lncRNA gene	Chr4:136717325-136738720 (-)
SPRET/EiJ	ENSMSPG00010036098	lncRNA gene	Chr4:138422337-138443937 (-)
WSB/EiJ	ENSIUOG00005047638	lncRNA gene	Chr4:136925970-136947443 (-)

Homology

• Gene Tree
  Gm57096
  

Sequences &
Gene Models

• All Sequences
  36

• Ensembl
  ENSMUSG00000120660 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120660	Ensembl Gene Model | MGI Sequence Detail	49498	C57BL/6J
transcript	ENSMUST00000244978	Ensembl | MGI Sequence Detail	1044	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57096:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr44468	Chr4:144619047-144619055 (-)	8,493 bp
Tssr44467	Chr4:144618866-144618933 (-)	8,644 bp