Gm57089 Gene Detail

Summary

• Symbol
  Gm57089
• Name
  predicted gene, 57089

• Feature Type
  lncRNA gene
• IDs
  MGI:7338091
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:129689343-129690535 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  51 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338091	lncRNA gene	Chr4:129689343-129690535 (+)
129S1/SvImJ	ENSMUSG00200021449	lncRNA gene	Chr4:123130279-123130744 (+)
A/J	ENSMUSG00195045990	lncRNA gene	Chr4:124464135-124464600 (+)
AKR/J	ENSMUSG00220048597	lncRNA gene	Chr4:123455890-123456355 (+)
BALB/cJ	ENSMUSG00180050102	lncRNA gene	Chr4:122097837-122098302 (+)
C3H/HeJ	ENSMUSG00175048601	lncRNA gene	Chr4:123110415-123110880 (+)
C57BL/6NJ	ENSMUSG00215052708	lncRNA gene	Chr4:124613838-124614190 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048119	lncRNA gene	Chr4:123993895-123994303 (+)
CBA/J	ENSMUSG00210053930	lncRNA gene	Chr4:122739431-122739896 (+)
DBA/2J	ENSMUSG00185052724	lncRNA gene	Chr4:124271780-124272245 (+)
FVB/NJ	ENSMUSG00205048953	lncRNA gene	Chr4:122498399-122498864 (+)
JF1/MsJ	ENSUMUG00000046781	lncRNA gene	Chr4:124916893-124917245 (+)
LP/J	ENSMUSG00230039355	lncRNA gene	Chr4:128067701-128068166 (+)
NOD/ShiLtJ	ENSMUSG00190050253	lncRNA gene	Chr4:122503805-122504270 (+)
NZO/HlLtJ	ENSMUSG00225027047	lncRNA gene	Chr4:133982678-133983143 (+)
PWK/PhJ	ENSLUMG00010049828	lncRNA gene	Chr4:121954275-121954683 (+)
SPRET/EiJ	ENSMSPG00010045487	lncRNA gene	Chr4:124023898-124024250 (+)
WSB/EiJ	ENSIUOG00005046488	lncRNA gene	Chr4:122366169-122366634 (+)

Homology

• Gene Tree
  Gm57089
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120600 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120600	Ensembl Gene Model | MGI Sequence Detail	1193	C57BL/6J
transcript	ENSMUST00000244478	Ensembl | MGI Sequence Detail	1193	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57089:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39182	Chr4:129689508-129689540 (+)	181 bp