Gm57088 Gene Detail

Summary

• Symbol
  Gm57088
• Name
  predicted gene, 57088

• Feature Type
  lncRNA gene
• IDs
  MGI:7338089
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr4:118963160-118964526 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  103 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338089	lncRNA gene	Chr4:118963160-118964526 (+)
129S1/SvImJ	ENSMUSG00200014457	lncRNA gene	Chr4:112867597-112868971 (+)
A/J	ENSMUSG00195034016	lncRNA gene	Chr4:114113554-114114907 (+)
AKR/J	ENSMUSG00220022788	lncRNA gene	Chr4:113474816-113476175 (+)
BALB/cJ	ENSMUSG00180047147	lncRNA gene	Chr4:112176577-112177959 (+)
C3H/HeJ	ENSMUSG00175026353	lncRNA gene	Chr4:113189798-113191178 (+)
C57BL/6NJ	ENSMUSG00215040320	lncRNA gene	Chr4:114301108-114302466 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045625	lncRNA gene	Chr4:112995923-112997246 (+)
CBA/J	ENSMUSG00210052815	lncRNA gene	Chr4:112796290-112797670 (+)
DBA/2J	ENSMUSG00185048548	lncRNA gene	Chr4:114348569-114349923 (+)
FVB/NJ	ENSMUSG00205026399	lncRNA gene	Chr4:112272202-112273580 (+)
JF1/MsJ	ENSUMUG00000024369	lncRNA gene	Chr4:114254816-114256187 (+)
LP/J	ENSMUSG00230046726	lncRNA gene	Chr4:117685377-117686751 (+)
NOD/ShiLtJ	ENSMUSG00190045328	lncRNA gene	Chr4:112179060-112180414 (+)
NZO/HlLtJ	ENSMUSG00225017193	lncRNA gene	Chr4:123232035-123233401 (+)
PWK/PhJ	ENSLUMG00010046282	lncRNA gene	Chr4:111673057-111674432 (+)
SPRET/EiJ	ENSMSPG00010042227	lncRNA gene	Chr4:113756744-113758113 (+)
WSB/EiJ	ENSIUOG00005047579	lncRNA gene	Chr4:112488697-112490064 (+)

Homology

• Gene Tree
  Gm57088
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120599 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120599	Ensembl Gene Model | MGI Sequence Detail	1367	C57BL/6J
transcript	ENSMUST00000244475	Ensembl | MGI Sequence Detail	1367	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57088:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38695	Chr4:118963214-118963231 (+)	63 bp
Tssr38696	Chr4:118963234-118963245 (+)	80 bp
Tssr38697	Chr4:118963254-118963263 (+)	99 bp