Gm57085 Gene Detail

Summary

• Symbol
  Gm57085
• Name
  predicted gene, 57085

• Feature Type
  lncRNA gene
• IDs
  MGI:7338083
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:3874020-3875558 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  101 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338083	lncRNA gene	Chr4:3874020-3875558 (-)
129S1/SvImJ	ENSMUSG00200001372	lncRNA gene	Chr4:505182-505889 (-)
A/J	ENSMUSG00195002882	lncRNA gene	Chr4:917839-918546 (-)
AKR/J	ENSMUSG00220001314	lncRNA gene	Chr4:739694-740401 (-)
BALB/cJ	ENSMUSG00180004628	lncRNA gene	Chr4:498847-499554 (-)
C3H/HeJ	ENSMUSG00175017981	lncRNA gene	Chr4:1022988-1023695 (-)
C57BL/6NJ	ENSMUSG00215004669	lncRNA gene	Chr4:599096-599803 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026373	lncRNA gene	Chr4:783626-784335 (-)
CBA/J	ENSMUSG00210002608	lncRNA gene	Chr4:763577-764284 (-)
DBA/2J	ENSMUSG00185002876	lncRNA gene	Chr4:884907-885614 (-)
FVB/NJ	ENSMUSG00205003720	lncRNA gene	Chr4:512548-513255 (-)
JF1/MsJ	ENSUMUG00000002500	lncRNA gene	Chr4:1034965-1035674 (-)
LP/J	ENSMUSG00230008673	lncRNA gene	Chr4:4055608-4056315 (-)
NOD/ShiLtJ	ENSMUSG00190014292	lncRNA gene	Chr4:583472-584179 (-)
NZO/HlLtJ	ENSMUSG00225000947	lncRNA gene	Chr4:8034437-8035144 (-)
PWK/PhJ	ENSLUMG00010005836	lncRNA gene	Chr4:488977-489686 (-)
SPRET/EiJ	ENSMSPG00010003036	lncRNA gene	Chr4:669414-670137 (-)
WSB/EiJ	ENSIUOG00005014244	lncRNA gene	Chr4:518823-519530 (-)

Homology

• Gene Tree
  Gm57085
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120032 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120032	Ensembl Gene Model | MGI Sequence Detail	1539	C57BL/6J
transcript	ENSMUST00000241093	Ensembl | MGI Sequence Detail	1539	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57085:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40813	Chr4:3875202-3875270 (-)	322 bp
Tssr40812	Chr4:3875168-3875179 (-)	384 bp