Gm57083 Gene Detail

Summary

• Symbol
  Gm57083
• Name
  predicted gene, 57083

• Feature Type
  lncRNA gene
• IDs
  MGI:7338079
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr4:101149310-101151906 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  163 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338079	lncRNA gene	Chr4:101149310-101151906 (+)
129S1/SvImJ	ENSMUSG00200030965	lncRNA gene	Chr4:96135548-96136614 (+)
A/J	ENSMUSG00195008950	lncRNA gene	Chr4:96684245-96685311 (+)
AKR/J	ENSMUSG00220006816	lncRNA gene	Chr4:96128698-96129764 (+)
BALB/cJ	ENSMUSG00180033530	lncRNA gene	Chr4:95614435-95615501 (+)
C3H/HeJ	ENSMUSG00175015509	lncRNA gene	Chr4:96603283-96604349 (+)
C57BL/6NJ	ENSMUSG00215020137	lncRNA gene	Chr4:96523286-96524352 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007792	lncRNA gene	Chr4:95800896-95801959 (+)
CBA/J	ENSMUSG00210029767	lncRNA gene	Chr4:96145639-96146705 (+)
DBA/2J	ENSMUSG00185022727	lncRNA gene	Chr4:96919739-96920805 (+)
FVB/NJ	ENSMUSG00205016466	lncRNA gene	Chr4:95113866-95114932 (+)
JF1/MsJ	ENSUMUG00000043277	lncRNA gene	Chr4:97018400-97019466 (+)
LP/J	ENSMUSG00230023404	lncRNA gene	Chr4:100225031-100226097 (+)
NOD/ShiLtJ	ENSMUSG00190035140	lncRNA gene	Chr4:95581890-95582956 (+)
NZO/HlLtJ	ENSMUSG00225033112	lncRNA gene	Chr4:105356460-105357526 (+)
PWK/PhJ	ENSLUMG00010018693	lncRNA gene	Chr4:94707907-94708973 (+)
SPRET/EiJ	ENSMSPG00010008660	lncRNA gene	Chr4:96937432-96938546 (+)
WSB/EiJ	ENSIUOG00005003181	lncRNA gene	Chr4:95892129-95893195 (+)

Homology

• Gene Tree
  Gm57083
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120569 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120569	Ensembl Gene Model | MGI Sequence Detail	2597	C57BL/6J
transcript	ENSMUST00000244220	Ensembl | MGI Sequence Detail	2597	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57083:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37985	Chr4:101149446-101149475 (+)	151 bp
Tssr37986	Chr4:101149495-101149505 (+)	190 bp
Tssr37987	Chr4:101149522-101149532 (+)	217 bp