Gm57082 Gene Detail

Summary

• Symbol
  Gm57082
• Name
  predicted gene, 57082

• Feature Type
  lncRNA gene
• IDs
  MGI:7338077
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:32165102-32176412 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  443 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338077	lncRNA gene	Chr4:32165102-32176412 (+)
129S1/SvImJ	ENSMUSG00200012955	lncRNA gene	Chr4:28857965-28876821 (+)
A/J	ENSMUSG00195000238	lncRNA gene	Chr4:29377229-29396084 (+)
AKR/J	ENSMUSG00220014671	lncRNA gene	Chr4:29169553-29188402 (+)
BALB/cJ	ENSMUSG00180000316	lncRNA gene	Chr4:28880362-28899216 (+)
C3H/HeJ	ENSMUSG00175002443	lncRNA gene	Chr4:29342314-29361136 (+)
C57BL/6NJ	ENSMUSG00215001009	lncRNA gene	Chr4:28963678-28975464 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000371	lncRNA gene	Chr4:28822522-28834594 (+)
CBA/J	ENSMUSG00210004759	lncRNA gene	Chr4:29066957-29085783 (+)
DBA/2J	ENSMUSG00185000367	lncRNA gene	Chr4:29139406-29158232 (+)
FVB/NJ	ENSMUSG00205000556	lncRNA gene	Chr4:28724530-28743356 (+)
JF1/MsJ	ENSUMUG00000002653	lncRNA gene	Chr4:29184755-29196524 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190000610	lncRNA gene	Chr4:29063771-29082589 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010007675	lncRNA gene	Chr4:28633776-28645266 (+)
SPRET/EiJ	ENSMSPG00010002503	lncRNA gene	Chr4:29460654-29472156 (+)
WSB/EiJ	ENSIUOG00005005242	lncRNA gene	Chr4:28870701-28882395 (+)

Homology

• Gene Tree
  Gm57082
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120548 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120548	Ensembl Gene Model | MGI Sequence Detail	11311	C57BL/6J
transcript	ENSMUST00000244106	Ensembl | MGI Sequence Detail	2016	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57082:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36664	Chr4:32165113-32165130 (+)	20 bp
Tssr36665	Chr4:32165150-32165161 (+)	54 bp