Gm57080 Gene Detail

Summary

• Symbol
  Gm57080
• Name
  predicted gene, 57080

• Feature Type
  lncRNA gene
• IDs
  MGI:7338073
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:94491400-94492973 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338073	lncRNA gene	Chr4:94491400-94492973 (+)
129S1/SvImJ	ENSMUSG00200010421	lncRNA gene	Chr4:89466707-89467553 (+)
A/J	ENSMUSG00195009579	lncRNA gene	Chr4:90015812-90016658 (+)
AKR/J	ENSMUSG00220020108	lncRNA gene	Chr4:89421025-89421871 (+)
BALB/cJ	ENSMUSG00180006257	lncRNA gene	Chr4:88963138-88963984 (+)
C3H/HeJ	ENSMUSG00175007961	lncRNA gene	Chr4:89902418-89903264 (+)
C57BL/6NJ	ENSMUSG00215022297	lncRNA gene	Chr4:89859743-89860584 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210016665	lncRNA gene	Chr4:89478999-89479845 (+)
DBA/2J	ENSMUSG00185002994	lncRNA gene	Chr4:90259480-90260324 (+)
FVB/NJ	ENSMUSG00205014208	lncRNA gene	Chr4:88411799-88412640 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230023702	lncRNA gene	Chr4:93577498-93578344 (+)
NOD/ShiLtJ	ENSMUSG00190017673	lncRNA gene	Chr4:88917146-88917992 (+)
NZO/HlLtJ	ENSMUSG00225003476	lncRNA gene	Chr4:98711614-98712455 (+)
PWK/PhJ	ENSLUMG00010003584	lncRNA gene	Chr4:88145841-88146686 (+)
SPRET/EiJ	ENSMSPG00010015465	lncRNA gene	Chr4:90173231-90174083 (+)
WSB/EiJ	ENSIUOG00005012880	lncRNA gene	Chr4:89270568-89271412 (+)

Homology

• Gene Tree
  Gm57080
  

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000120529 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120529	Ensembl Gene Model | MGI Sequence Detail	1574	C57BL/6J
transcript	ENSMUST00000243997	Ensembl | MGI Sequence Detail	1574	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57080:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37794	Chr4:94491498-94491518 (+)	108 bp
Tssr37795	Chr4:94491758-94491775 (+)	367 bp