Gm57071 Gene Detail

Summary

• Symbol
  Gm57071
• Name
  predicted gene, 57071

• Feature Type
  lncRNA gene
• IDs
  MGI:7338055
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr4:106171838-106174394 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338055	lncRNA gene	Chr4:106171838-106174394 (-)
129S1/SvImJ	ENSMUSG00200030358	lncRNA gene	Chr4:101231198-101232759 (-)
A/J	ENSMUSG00195009117	lncRNA gene	Chr4:101774911-101776472 (-)
AKR/J	ENSMUSG00220006903	lncRNA gene	Chr4:101178026-101179587 (-)
BALB/cJ	ENSMUSG00180034198	lncRNA gene	Chr4:100617901-100619462 (-)
C3H/HeJ	ENSMUSG00175015770	lncRNA gene	Chr4:101622465-101624026 (-)
C57BL/6NJ	ENSMUSG00215021052	lncRNA gene	Chr4:101503382-101504943 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007523	lncRNA gene	Chr4:100728708-100730269 (-)
CBA/J	ENSMUSG00210029357	lncRNA gene	Chr4:101255455-101257016 (-)
DBA/2J	ENSMUSG00185022885	lncRNA gene	Chr4:101949221-101950782 (-)
FVB/NJ	ENSMUSG00205015638	lncRNA gene	Chr4:100185608-100187169 (-)
JF1/MsJ	ENSUMUG00000042145	lncRNA gene	Chr4:101969781-101971343 (-)
LP/J	ENSMUSG00230009976	lncRNA gene	Chr4:105267691-105269252 (-)
NOD/ShiLtJ	ENSMUSG00190035032	lncRNA gene	Chr4:100622342-100623903 (-)
NZO/HlLtJ	ENSMUSG00225033162	lncRNA gene	Chr4:110368249-110369810 (-)
PWK/PhJ	ENSLUMG00010018789	lncRNA gene	Chr4:99686517-99688079 (-)
SPRET/EiJ	ENSMSPG00010028852	lncRNA gene	Chr4:101935370-101936996 (-)
WSB/EiJ	ENSIUOG00005003112	lncRNA gene	Chr4:100832862-100834419 (-)

Homology

• Gene Tree
  Gm57071
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  8
• Gene trapped
  8
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000120027 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120027	Ensembl Gene Model | MGI Sequence Detail	2557	C57BL/6J
transcript	ENSMUST00000241076	Ensembl | MGI Sequence Detail	1382	Not Applicable

References

• Summaries
  All 4

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm57071:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42626	Chr4:106173439-106173457 (-)	946 bp
Tssr42625	Chr4:106173409-106173420 (-)	979 bp
Tssr42624	Chr4:106173336-106173398 (-)	1,027 bp