Gm57065 Gene Detail

Summary

• Symbol
  Gm57065
• Name
  predicted gene, 57065

• Feature Type
  lncRNA gene
• IDs
  MGI:7338043
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr4:151946630-151948007 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  103 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338043	lncRNA gene	Chr4:151946630-151948007 (+)
129S1/SvImJ	ENSMUSG00200019650	lncRNA gene	Chr4:143011084-143012175 (+)
A/J	ENSMUSG00195021238	lncRNA gene	Chr4:144646936-144648031 (+)
AKR/J	ENSMUSG00220027178	lncRNA gene	Chr4:144233452-144234547 (+)
BALB/cJ	ENSMUSG00180002559	lncRNA gene	Chr4:142329211-142330306 (+)
C3H/HeJ	ENSMUSG00175019701	lncRNA gene	Chr4:145614053-145615148 (+)
C57BL/6NJ	ENSMUSG00215029709	lncRNA gene	Chr4:144457689-144458784 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035904	lncRNA gene	Chr4:148329244-148330338 (+)
CBA/J	ENSMUSG00210005996	lncRNA gene	Chr4:144265703-144266798 (+)
DBA/2J	ENSMUSG00185017361	lncRNA gene	Chr4:147830609-147831704 (+)
FVB/NJ	ENSMUSG00205021927	lncRNA gene	Chr4:142727046-142728141 (+)
JF1/MsJ	ENSUMUG00000007941	lncRNA gene	Chr4:150845408-150846499 (+)
LP/J	ENSMUSG00230026049	lncRNA gene	Chr4:154563794-154564889 (+)
NOD/ShiLtJ	ENSMUSG00190004265	lncRNA gene	Chr4:143929829-143930924 (+)
NZO/HlLtJ	ENSMUSG00225024602	lncRNA gene	Chr4:158557356-158558451 (+)
PWK/PhJ	ENSLUMG00010027621	lncRNA gene	Chr4:143122321-143123414 (+)
SPRET/EiJ	ENSMSPG00010024498	lncRNA gene	Chr4:145048742-145049838 (+)
WSB/EiJ	ENSIUOG00005006668	lncRNA gene	Chr4:142135266-142136361 (+)

Homology

• Gene Tree
  Gm57065
  

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000120016 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120016	Ensembl Gene Model | MGI Sequence Detail	1378	C57BL/6J
transcript	ENSMUST00000241040	Ensembl | MGI Sequence Detail	1378	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57065:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40478	Chr4:151946634-151946676 (+)	25 bp
Tssr40479	Chr4:151946701-151946712 (+)	77 bp
Tssr40480	Chr4:151947105-151947128 (+)	487 bp