Gm57064 Gene Detail

Summary

• Symbol
  Gm57064
• Name
  predicted gene, 57064

• Feature Type
  lncRNA gene
• IDs
  MGI:7338041
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:154110178-154137478 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  848 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338041	lncRNA gene	Chr4:154110178-154137478 (+)
129S1/SvImJ	ENSMUSG00200019659	lncRNA gene	Chr4:145171648-145188896 (+)
A/J	ENSMUSG00195020909	lncRNA gene	Chr4:146828238-146845480 (+)
AKR/J	ENSMUSG00220027761	lncRNA gene	Chr4:146414812-146432055 (+)
BALB/cJ	ENSMUSG00180002694	lncRNA gene	Chr4:144489270-144506531 (+)
C3H/HeJ	ENSMUSG00175019207	lncRNA gene	Chr4:147795155-147812397 (+)
C57BL/6NJ	ENSMUSG00215029554	lncRNA gene	Chr4:146626320-146643581 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036292	lncRNA gene	Chr4:150491293-150508464 (+)
CBA/J	ENSMUSG00210006049	lncRNA gene	Chr4:146453385-146470635 (+)
DBA/2J	ENSMUSG00185017377	lncRNA gene	Chr4:150010609-150027853 (+)
FVB/NJ	ENSMUSG00205022867	lncRNA gene	Chr4:144907223-144924468 (+)
JF1/MsJ	ENSUMUG00000000463	lncRNA gene	Chr4:153020859-153038383 (+)
LP/J	ENSMUSG00230026106	lncRNA gene	Chr4:156732385-156749643 (+)
NOD/ShiLtJ	ENSMUSG00190004206	lncRNA gene	Chr4:146110951-146128193 (+)
NZO/HlLtJ	ENSMUSG00225024616	lncRNA gene	Chr4:160726802-160744068 (+)
PWK/PhJ	ENSLUMG00010028222	lncRNA gene	Chr4:145285513-145302856 (+)
SPRET/EiJ	ENSMSPG00010024596	lncRNA gene	Chr4:147241158-147259380 (+)
WSB/EiJ	ENSIUOG00005006677	lncRNA gene	Chr4:144320129-144337417 (+)

Homology

• Gene Tree
  Gm57064
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  43

• Ensembl
  ENSMUSG00000119980 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119980	Ensembl Gene Model | MGI Sequence Detail	27301	C57BL/6J
transcript	ENSMUST00000296859	Ensembl | MGI Sequence Detail	1341	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57064:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40573	Chr4:154110479-154110516 (+)	320 bp
Tssr40574	Chr4:154110651-154110669 (+)	482 bp