Gm57061 Gene Detail

Summary

• Symbol
  Gm57061
• Name
  predicted gene, 57061

• Feature Type
  lncRNA gene
• IDs
  MGI:7338035
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr9:107552988-107555468 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338035	lncRNA gene	Chr9:107552988-107555468 (+)
129S1/SvImJ	ENSMUSG00200044477	lncRNA gene	Chr9:104748660-104751000 (+)
A/J	ENSMUSG00195046752	lncRNA gene	Chr9:103967434-103969774 (+)
AKR/J	ENSMUSG00220030663	lncRNA gene	Chr9:104357324-104359664 (+)
BALB/cJ	ENSMUSG00180036817	lncRNA gene	Chr9:104283894-104286234 (+)
C3H/HeJ	ENSMUSG00175046200	lncRNA gene	Chr9:104626208-104628548 (+)
C57BL/6NJ	ENSMUSG00215042277	lncRNA gene	Chr9:104603354-104605830 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034943	lncRNA gene	Chr9:104376315-104378656 (+)
CBA/J	ENSMUSG00210047009	lncRNA gene	Chr9:104473490-104475966 (+)
DBA/2J	ENSMUSG00185045226	lncRNA gene	Chr9:104638146-104640486 (+)
FVB/NJ	ENSMUSG00205049863	lncRNA gene	Chr9:104636895-104639235 (+)
JF1/MsJ	ENSUMUG00000055267	lncRNA gene	Chr9:104462514-104464992 (+)
LP/J	ENSMUSG00230050637	lncRNA gene	Chr9:104777586-104779926 (+)
NOD/ShiLtJ	ENSMUSG00190050086	lncRNA gene	Chr9:104274094-104276434 (+)
NZO/HlLtJ	ENSMUSG00225024823	lncRNA gene	Chr9:105011452-105013792 (+)
PWK/PhJ	ENSLUMG00010044163	lncRNA gene	Chr9:104421036-104423513 (+)
SPRET/EiJ	ENSMSPG00010047127	lncRNA gene	Chr9:106251814-106254099 (+)
WSB/EiJ	ENSIUOG00005048066	lncRNA gene	Chr9:103720187-103722527 (+)

Homology

• Gene Tree
  Gm57061
  

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000121142 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121142	Ensembl Gene Model | MGI Sequence Detail	2481	C57BL/6J
transcript	ENSMUST00000247278	Ensembl | MGI Sequence Detail	2477	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57061:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr87022	Chr9:107552056-107552077 (+)	-921 bp
Tssr87023	Chr9:107552979-107552993 (+)	-2 bp
Tssr87024	Chr9:107553241-107553250 (+)	258 bp