Gm57055 Gene Detail

Summary

• Symbol
  Gm57055
• Name
  predicted gene, 57055

• Feature Type
  lncRNA gene
• IDs
  MGI:7338023
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr9:96407346-96488261 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2436 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338023	lncRNA gene	Chr9:96407346-96488261 (+)
129S1/SvImJ	ENSMUSG00200017050	lncRNA gene	Chr9:93522683-93525062 (+)
A/J	ENSMUSG00195018778	lncRNA gene	Chr9:92789928-92792318 (+)
AKR/J	ENSMUSG00220041895	lncRNA gene	Chr9:93143284-93145653 (+)
BALB/cJ	ENSMUSG00180023863	lncRNA gene	Chr9:93109971-93112359 (+)
C3H/HeJ	ENSMUSG00175013570	lncRNA gene	Chr9:93449905-93452293 (+)
C57BL/6NJ	ENSMUSG00215022806	lncRNA gene	Chr9:93423503-93425881 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013744	lncRNA gene	Chr9:93277139-93279499 (+)
CBA/J	ENSMUSG00210015375	lncRNA gene	Chr9:93291917-93294305 (+)
DBA/2J	ENSMUSG00185012018	lncRNA gene	Chr9:93478035-93480422 (+)
FVB/NJ	ENSMUSG00205025447	lncRNA gene	Chr9:93482881-93485269 (+)
JF1/MsJ	ENSUMUG00000042194	lncRNA gene	Chr9:93189782-93192105 (+)
LP/J	ENSMUSG00230021527	lncRNA gene	Chr9:93646346-93648735 (+)
NOD/ShiLtJ	ENSMUSG00190041673	lncRNA gene	Chr9:93110073-93112450 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010027481	lncRNA gene	Chr9:93185385-93187729 (+)
SPRET/EiJ	ENSMSPG00010003926	lncRNA gene	Chr9:94991599-94993762 (+)
WSB/EiJ	ENSIUOG00005024640	lncRNA gene	Chr9:92551274-92553658 (+)

Homology

• Gene Tree
  Gm57055
  

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000121112 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121112	Ensembl Gene Model | MGI Sequence Detail	80916	C57BL/6J
transcript	ENSMUST00000355526	Ensembl | MGI Sequence Detail	2113	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57055:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86606	Chr9:96407356-96407377 (+)	21 bp
Tssr86607	Chr9:96407380-96407415 (+)	52 bp
Tssr86608	Chr9:96407617-96407626 (+)	276 bp