Gm57054 Gene Detail

Summary

• Symbol
  Gm57054
• Name
  predicted gene, 57054

• Feature Type
  lncRNA gene
• IDs
  MGI:7338021
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:101868934-101874744 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  343 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338021	lncRNA gene	Chr9:101868934-101874744 (+)
129S1/SvImJ	ENSMUSG00200016720	lncRNA gene	Chr9:99025606-99031436 (+)
A/J	ENSMUSG00195021300	lncRNA gene	Chr9:98248372-98254203 (+)
AKR/J	ENSMUSG00220040231	lncRNA gene	Chr9:98643205-98649036 (+)
BALB/cJ	ENSMUSG00180023968	lncRNA gene	Chr9:98565099-98570930 (+)
C3H/HeJ	ENSMUSG00175013605	lncRNA gene	Chr9:98907738-98913568 (+)
C57BL/6NJ	ENSMUSG00215028422	lncRNA gene	Chr9:98893064-98898875 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013798	lncRNA gene	Chr9:98692607-98698458 (+)
CBA/J	ENSMUSG00210015567	lncRNA gene	Chr9:98746974-98752805 (+)
DBA/2J	ENSMUSG00185012455	lncRNA gene	Chr9:98914945-98920777 (+)
FVB/NJ	ENSMUSG00205032413	lncRNA gene	Chr9:98919695-98925540 (+)
JF1/MsJ	ENSUMUG00000041700	lncRNA gene	Chr9:98751326-98757171 (+)
LP/J	ENSMUSG00230022207	lncRNA gene	Chr9:99069556-99075365 (+)
NOD/ShiLtJ	ENSMUSG00190037633	lncRNA gene	Chr9:98530708-98536538 (+)
NZO/HlLtJ	ENSMUSG00225020383	lncRNA gene	Chr9:99281846-99287656 (+)
PWK/PhJ	ENSLUMG00010028388	lncRNA gene	Chr9:98679494-98685326 (+)
SPRET/EiJ	ENSMSPG00010004073	lncRNA gene	Chr9:100548111-100553973 (+)
WSB/EiJ	ENSIUOG00005024688	lncRNA gene	Chr9:97996553-98002364 (+)

Homology

• Gene Tree
  Gm57054
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120943 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120943	Ensembl Gene Model | MGI Sequence Detail	5811	C57BL/6J
transcript	ENSMUST00000246600	Ensembl | MGI Sequence Detail	3245	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57054:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86719	Chr9:101868949-101868975 (+)	28 bp