Gm57048 Gene Detail

Summary

• Symbol
  Gm57048
• Name
  predicted gene, 57048

• Feature Type
  lncRNA gene
• IDs
  MGI:7338009
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:96841916-96855378 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  522 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338009	lncRNA gene	Chr9:96841916-96855378 (-)
129S1/SvImJ	ENSMUSG00200016598	lncRNA gene	Chr9:93966506-93973293 (-)
A/J	ENSMUSG00195019348	lncRNA gene	Chr9:93221473-93228260 (-)
AKR/J	ENSMUSG00220042026	lncRNA gene	Chr9:93575051-93581831 (-)
BALB/cJ	ENSMUSG00180028255	lncRNA gene	Chr9:93541504-93548291 (-)
C3H/HeJ	ENSMUSG00175012568	lncRNA gene	Chr9:93881425-93888212 (-)
C57BL/6NJ	ENSMUSG00215022125	lncRNA gene	Chr9:93858535-93865322 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014137	lncRNA gene	Chr9:93711099-93717886 (-)
CBA/J	ENSMUSG00210015396	lncRNA gene	Chr9:93723440-93730227 (-)
DBA/2J	ENSMUSG00185012698	lncRNA gene	Chr9:93909566-93916353 (-)
FVB/NJ	ENSMUSG00205025353	lncRNA gene	Chr9:93914409-93921196 (-)
JF1/MsJ	ENSUMUG00000041532	lncRNA gene	Chr9:93635479-93642256 (-)
LP/J	ENSMUSG00230021372	lncRNA gene	Chr9:94077848-94084635 (-)
NOD/ShiLtJ	ENSMUSG00190037514	lncRNA gene	Chr9:93545032-93551819 (-)
NZO/HlLtJ	ENSMUSG00225021527	lncRNA gene	Chr9:94210986-94217763 (-)
PWK/PhJ	ENSLUMG00010028515	lncRNA gene	Chr9:93629962-93636740 (-)
SPRET/EiJ	ENSMSPG00010003874	lncRNA gene	Chr9:95425425-95432249 (-)
WSB/EiJ	ENSIUOG00005024259	lncRNA gene	Chr9:92983939-92990695 (-)

Homology

• Gene Tree
  Gm57048
  

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000120338 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120338	Ensembl Gene Model | MGI Sequence Detail	13463	C57BL/6J
transcript	ENSMUST00000335040	Ensembl | MGI Sequence Detail	509	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57048:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr91011	Chr9:96848640-96848666 (-)	6,725 bp
Tssr91010	Chr9:96848628-96848638 (-)	6,745 bp