Gm57047 Gene Detail

Summary

• Symbol
  Gm57047
• Name
  predicted gene, 57047

• Feature Type
  lncRNA gene
• IDs
  MGI:7338007
• Alliance
  genome feature page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr9:62252176-62254041 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  106 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338007	lncRNA gene	Chr9:62252176-62254041 (+)
129S1/SvImJ	ENSMUSG00200036193	lncRNA gene	Chr9:59372593-59374467 (+)
A/J	ENSMUSG00195042911	lncRNA gene	Chr9:59075912-59077784 (+)
AKR/J	ENSMUSG00220032984	lncRNA gene	Chr9:59221768-59223633 (+)
BALB/cJ	ENSMUSG00180019841	lncRNA gene	Chr9:59200375-59202240 (+)
C3H/HeJ	ENSMUSG00175022820	lncRNA gene	Chr9:59207496-59209368 (+)
C57BL/6NJ	ENSMUSG00215035743	lncRNA gene	Chr9:59187515-59189380 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021517	lncRNA gene	Chr9:59128607-59130472 (+)
CBA/J	ENSMUSG00210043384	lncRNA gene	Chr9:59302173-59304046 (+)
DBA/2J	ENSMUSG00185044184	lncRNA gene	Chr9:59326941-59328814 (+)
FVB/NJ	ENSMUSG00205044764	lncRNA gene	Chr9:59644952-59646824 (+)
JF1/MsJ	ENSUMUG00000049604	lncRNA gene	Chr9:59372896-59374761 (+)
LP/J	ENSMUSG00230039550	lncRNA gene	Chr9:59571965-59573839 (+)
NOD/ShiLtJ	ENSMUSG00190045211	lncRNA gene	Chr9:59404630-59406502 (+)
NZO/HlLtJ	ENSMUSG00225028401	lncRNA gene	Chr9:59630541-59632413 (+)
PWK/PhJ	ENSLUMG00010039862	lncRNA gene	Chr9:59335975-59337841 (+)
SPRET/EiJ	ENSMSPG00010027882	lncRNA gene	Chr9:60410421-60412326 (+)
WSB/EiJ	ENSIUOG00005041627	lncRNA gene	Chr9:58814064-58815938 (+)

Homology

• Gene Tree
  Gm57047
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121050 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121050	Ensembl Gene Model | MGI Sequence Detail	1866	C57BL/6J
transcript	ENSMUST00000246992	Ensembl | MGI Sequence Detail	1866	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57047:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85528	Chr9:62252037-62252053 (+)	-131 bp
Tssr85529	Chr9:62252065-62252081 (+)	-103 bp
Tssr85530	Chr9:62252155-62252192 (+)	-2 bp
Tssr85531	Chr9:62252639-62252649 (+)	468 bp
Tssr85532	Chr9:62252669-62252687 (+)	502 bp
Tssr85533	Chr9:62252705-62252724 (+)	539 bp
Tssr85534	Chr9:62252728-62252735 (+)	556 bp