Gm57046 Gene Detail

Summary

• Symbol
  Gm57046
• Name
  predicted gene, 57046

• Feature Type
  lncRNA gene
• IDs
  MGI:7338005
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr9:107971854-107980882 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  245 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338005	lncRNA gene	Chr9:107971854-107980882 (+)
129S1/SvImJ	ENSMUSG00200044224	lncRNA gene	Chr9:105170415-105175809 (+)
A/J	ENSMUSG00195045068	lncRNA gene	Chr9:104389181-104394572 (+)
AKR/J	ENSMUSG00220032151	lncRNA gene	Chr9:104776255-104781652 (+)
BALB/cJ	ENSMUSG00180034955	lncRNA gene	Chr9:104705686-104711079 (+)
C3H/HeJ	ENSMUSG00175046109	lncRNA gene	Chr9:105047973-105053365 (+)
C57BL/6NJ	ENSMUSG00215042437	lncRNA gene	Chr9:105025121-105030502 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034874	lncRNA gene	Chr9:104798763-104804159 (+)
CBA/J	ENSMUSG00210045697	lncRNA gene	Chr9:104897297-104902693 (+)
DBA/2J	ENSMUSG00185044990	lncRNA gene	Chr9:105057046-105062444 (+)
FVB/NJ	ENSMUSG00205050821	lncRNA gene	Chr9:105058727-105064120 (+)
JF1/MsJ	ENSUMUG00000055516	lncRNA gene	Chr9:104886538-104891934 (+)
LP/J	ENSMUSG00230050632	lncRNA gene	Chr9:105199301-105204695 (+)
NOD/ShiLtJ	ENSMUSG00190050591	lncRNA gene	Chr9:104695843-104701235 (+)
NZO/HlLtJ	ENSMUSG00225024748	lncRNA gene	Chr9:105430323-105435720 (+)
PWK/PhJ	ENSLUMG00010045254	lncRNA gene	Chr9:104843667-104849069 (+)
SPRET/EiJ	ENSMSPG00010048962	lncRNA gene	Chr9:106671830-106676971 (+)
WSB/EiJ	ENSIUOG00005046809	lncRNA gene	Chr9:104142323-104147727 (+)

Homology

• Gene Tree
  Gm57046
  

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000120509 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120509	Ensembl Gene Model | MGI Sequence Detail	9029	C57BL/6J
transcript	ENSMUST00000343001	Ensembl | MGI Sequence Detail	2117	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57046:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr87065	Chr9:107971856-107971895 (+)	22 bp
Tssr87066	Chr9:107972391-107972412 (+)	548 bp
Tssr87067	Chr9:107972436-107972450 (+)	589 bp