Gm57045 Gene Detail

Summary

• Symbol
  Gm57045
• Name
  predicted gene, 57045

• Feature Type
  lncRNA gene
• IDs
  MGI:7338003
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:99065612-99120103 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1883 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338003	lncRNA gene	Chr9:99065612-99120103 (+)
129S1/SvImJ	ENSMUSG00200016671	lncRNA gene	Chr9:96186048-96188351 (+)
A/J	ENSMUSG00195018731	lncRNA gene	Chr9:95427948-95430251 (+)
AKR/J	ENSMUSG00220040080	lncRNA gene	Chr9:95797716-95800019 (+)
BALB/cJ	ENSMUSG00180026263	lncRNA gene	Chr9:95747522-95749825 (+)
C3H/HeJ	ENSMUSG00175012753	lncRNA gene	Chr9:96090344-96092647 (+)
C57BL/6NJ	ENSMUSG00215031116	lncRNA gene	Chr9:96083596-96085899 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014441	lncRNA gene	Chr9:95914114-95916417 (+)
CBA/J	ENSMUSG00210015742	lncRNA gene	Chr9:95928646-95930949 (+)
DBA/2J	ENSMUSG00185012683	lncRNA gene	Chr9:96106222-96108491 (+)
FVB/NJ	ENSMUSG00205029474	lncRNA gene	Chr9:96121187-96123490 (+)
JF1/MsJ	ENSUMUG00000045006	lncRNA gene	Chr9:95896940-95899413 (+)
LP/J	ENSMUSG00230022394	lncRNA gene	Chr9:96274197-96276466 (+)
NOD/ShiLtJ	ENSMUSG00190039316	lncRNA gene	Chr9:95750143-95752448 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010027294	lncRNA gene	Chr9:95875087-95877559 (+)
SPRET/EiJ	ENSMSPG00010004136	lncRNA gene	Chr9:97696349-97698647 (+)
WSB/EiJ	ENSIUOG00005025944	lncRNA gene	Chr9:95181888-95184191 (+)

Homology

• Gene Tree
  Gm57045
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120770 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120770	Ensembl Gene Model | MGI Sequence Detail	54492	C57BL/6J
transcript	ENSMUST00000324442	Ensembl | MGI Sequence Detail	1174	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57045:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86676	Chr9:99065606-99065651 (+)	17 bp
Tssr86677	Chr9:99065671-99065696 (+)	72 bp