Gm57041 Gene Detail

Summary

• Symbol
  Gm57041
• Name
  predicted gene, 57041

• Feature Type
  lncRNA gene
• IDs
  MGI:7337995
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:97023136-97026292 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  227 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337995	lncRNA gene	Chr9:97023136-97026292 (+)
129S1/SvImJ	ENSMUSG00200016694	lncRNA gene	Chr9:94147678-94150800 (+)
A/J	ENSMUSG00195021116	lncRNA gene	Chr9:93403722-93406849 (+)
AKR/J	ENSMUSG00220039822	lncRNA gene	Chr9:93756287-93759436 (+)
BALB/cJ	ENSMUSG00180024867	lncRNA gene	Chr9:93723466-93726587 (+)
C3H/HeJ	ENSMUSG00175012601	lncRNA gene	Chr9:94062911-94066036 (+)
C57BL/6NJ	ENSMUSG00215031958	lncRNA gene	Chr9:94039654-94042781 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013220	lncRNA gene	Chr9:93892627-93895754 (+)
CBA/J	ENSMUSG00210015955	lncRNA gene	Chr9:93904667-93907794 (+)
DBA/2J	ENSMUSG00185012650	lncRNA gene	Chr9:94090967-94094092 (+)
FVB/NJ	ENSMUSG00205026059	lncRNA gene	Chr9:94095944-94099073 (+)
JF1/MsJ	ENSUMUG00000048371	lncRNA gene	Chr9:93821189-93824372 (+)
LP/J	ENSMUSG00230021433	lncRNA gene	Chr9:94259154-94262279 (+)
NOD/ShiLtJ	ENSMUSG00190038201	lncRNA gene	Chr9:93726261-93729381 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010028679	lncRNA gene	Chr9:93815265-93818432 (+)
SPRET/EiJ	ENSMSPG00010003895	lncRNA gene	Chr9:95604724-95607830 (+)
WSB/EiJ	ENSIUOG00005024488	lncRNA gene	Chr9:93164797-93167919 (+)

Homology

• Gene Tree
  Gm57041
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120955 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120955	Ensembl Gene Model | MGI Sequence Detail	3157	C57BL/6J
transcript	ENSMUST00000305558	Ensembl | MGI Sequence Detail	423	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57041:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86631	Chr9:97023166-97023192 (+)	43 bp