Gm57040 Gene Detail

Summary

• Symbol
  Gm57040
• Name
  predicted gene, 57040

• Feature Type
  lncRNA gene
• IDs
  MGI:7337993
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:114647930-114648155 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337993	lncRNA gene	Chr9:114647930-114648155 (-)
129S1/SvImJ	ENSMUSG00200031731	lncRNA gene	Chr9:111751224-111751447 (-)
A/J	ENSMUSG00195045418	lncRNA gene	Chr9:110950038-110950261 (-)
AKR/J	ENSMUSG00220019651	lncRNA gene	Chr9:111412870-111413093 (-)
BALB/cJ	ENSMUSG00180035407	lncRNA gene	Chr9:111487753-111487976 (-)
C3H/HeJ	ENSMUSG00175020187	lncRNA gene	Chr9:111709714-111709937 (-)
C57BL/6NJ	ENSMUSG00215034542	lncRNA gene	Chr9:111593028-111593251 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016852	lncRNA gene	Chr9:111375556-111375779 (-)
CBA/J	ENSMUSG00210040729	lncRNA gene	Chr9:111435442-111435665 (-)
DBA/2J	ENSMUSG00185017020	lncRNA gene	Chr9:111772170-111772393 (-)
FVB/NJ	ENSMUSG00205028962	lncRNA gene	Chr9:111610382-111610605 (-)
JF1/MsJ	ENSUMUG00000047748	lncRNA gene	Chr9:111605377-111605594 (-)
LP/J	ENSMUSG00230050388	lncRNA gene	Chr9:111879940-111880163 (-)
NOD/ShiLtJ	ENSMUSG00190051056	lncRNA gene	Chr9:111365300-111365523 (-)
NZO/HlLtJ	ENSMUSG00225024087	lncRNA gene	Chr9:112160842-112161065 (-)
PWK/PhJ	ENSLUMG00010039207	lncRNA gene	Chr9:111548992-111549209 (-)
SPRET/EiJ	ENSMSPG00010025969	lncRNA gene	Chr9:113209403-113209626 (-)
WSB/EiJ	ENSIUOG00005048317	lncRNA gene	Chr9:110827793-110828016 (-)

Homology

• Gene Tree
  Gm57040
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120946 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120946	Ensembl Gene Model | MGI Sequence Detail	226	C57BL/6J
transcript	ENSMUST00000246607	Ensembl | MGI Sequence Detail	226	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57040:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr91878	Chr9:114648145-114648154 (-)	5 bp
Tssr91877	Chr9:114648101-114648110 (-)	49 bp