Gm57039 Gene Detail

Summary

• Symbol
  Gm57039
• Name
  predicted gene, 57039

• Feature Type
  lncRNA gene
• IDs
  MGI:7337991
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr9:108729598-108732507 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  90 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337991	lncRNA gene	Chr9:108729598-108732507 (-)
129S1/SvImJ	ENSMUSG00200045109	lncRNA gene	Chr9:105925876-105928088 (-)
A/J	ENSMUSG00195044704	lncRNA gene	Chr9:105145087-105147297 (-)
AKR/J	ENSMUSG00220032509	lncRNA gene	Chr9:105532402-105534612 (-)
BALB/cJ	ENSMUSG00180035215	lncRNA gene	Chr9:105461557-105463767 (-)
C3H/HeJ	ENSMUSG00175045680	lncRNA gene	Chr9:105803813-105806023 (-)
C57BL/6NJ	ENSMUSG00215042337	lncRNA gene	Chr9:105782439-105784650 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034712	lncRNA gene	Chr9:105558050-105560262 (-)
CBA/J	ENSMUSG00210046297	lncRNA gene	Chr9:105657503-105659714 (-)
DBA/2J	ENSMUSG00185045406	lncRNA gene	Chr9:105813243-105815453 (-)
FVB/NJ	ENSMUSG00205050346	lncRNA gene	Chr9:105814620-105816830 (-)
JF1/MsJ	ENSUMUG00000055974	lncRNA gene	Chr9:105646824-105649035 (-)
LP/J	ENSMUSG00230050295	lncRNA gene	Chr9:105954689-105956901 (-)
NOD/ShiLtJ	ENSMUSG00190049460	lncRNA gene	Chr9:105451650-105453861 (-)
NZO/HlLtJ	ENSMUSG00225024466	lncRNA gene	Chr9:106186428-106188638 (-)
PWK/PhJ	ENSLUMG00010045120	lncRNA gene	Chr9:105610578-105612788 (-)
SPRET/EiJ	ENSMSPG00010048695	lncRNA gene	Chr9:107436659-107438933 (-)
WSB/EiJ	ENSIUOG00005048506	lncRNA gene	Chr9:104902776-104904986 (-)

Homology

• Gene Tree
  Gm57039
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120856 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120856	Ensembl Gene Model | MGI Sequence Detail	2910	C57BL/6J
transcript	ENSMUST00000246131	Ensembl | MGI Sequence Detail	2654	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57039:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr91560	Chr9:108732494-108732511 (-)	4 bp
Tssr91559	Chr9:108731774-108731799 (-)	720 bp
Tssr91558	Chr9:108731759-108731770 (-)	742 bp