Gm57035 Gene Detail

Summary

• Symbol
  Gm57035
• Name
  predicted gene, 57035

• Feature Type
  lncRNA gene
• IDs
  MGI:7337983
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:21401650-21401792 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  89 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337983	lncRNA gene	Chr9:21401650-21401792 (+)
129S1/SvImJ	ENSMUSG00200049672	lncRNA gene	Chr9:18355913-18356055 (+)
A/J	ENSMUSG00195040958	lncRNA gene	Chr9:18192494-18192636 (+)
AKR/J	ENSMUSG00220034659	lncRNA gene	Chr9:18194919-18195061 (+)
BALB/cJ	ENSMUSG00180044027	lncRNA gene	Chr9:18326773-18326915 (+)
C3H/HeJ	ENSMUSG00175044467	lncRNA gene	Chr9:18289353-18289495 (+)
C57BL/6NJ	ENSMUSG00215039070	lncRNA gene	Chr9:18286614-18286756 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033943	lncRNA gene	Chr9:18333760-18333902 (+)
CBA/J	ENSMUSG00210044703	lncRNA gene	Chr9:18270276-18270418 (+)
DBA/2J	ENSMUSG00185026941	lncRNA gene	Chr9:18385573-18385715 (+)
FVB/NJ	ENSMUSG00205045581	lncRNA gene	Chr9:18616105-18616247 (+)
JF1/MsJ	ENSUMUG00000050461	lncRNA gene	Chr9:18496549-18496691 (+)
LP/J	ENSMUSG00230044804	lncRNA gene	Chr9:18774118-18774260 (+)
NOD/ShiLtJ	ENSMUSG00190043362	lncRNA gene	Chr9:18307885-18308027 (+)
NZO/HlLtJ	ENSMUSG00225051463	lncRNA gene	Chr9:18727603-18727745 (+)
PWK/PhJ	ENSLUMG00010048828	lncRNA gene	Chr9:18386676-18386818 (+)
SPRET/EiJ	ENSMSPG00010026646	lncRNA gene	Chr9:18617943-18618085 (+)
WSB/EiJ	ENSIUOG00005045571	lncRNA gene	Chr9:17853122-17853264 (+)

Homology

• Gene Tree
  Gm57035
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120848 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120848	Ensembl Gene Model | MGI Sequence Detail	143	C57BL/6J
transcript	ENSMUST00000246092	Ensembl | MGI Sequence Detail	143	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57035:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr84002	Chr9:21401659-21401670 (+)	15 bp