Gm57034 Gene Detail

Summary

• Symbol
  Gm57034
• Name
  predicted gene, 57034

• Feature Type
  lncRNA gene
• IDs
  MGI:7337981
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr9:58182512-58235579 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1558 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337981	lncRNA gene	Chr9:58182512-58235579 (+)
129S1/SvImJ	ENSMUSG00200035873	lncRNA gene	Chr9:55309580-55310466 (+)
A/J	ENSMUSG00195040692	lncRNA gene	Chr9:55016683-55017569 (+)
AKR/J	ENSMUSG00220032134	lncRNA gene	Chr9:55151728-55152620 (+)
BALB/cJ	ENSMUSG00180019543	lncRNA gene	Chr9:55124343-55125229 (+)
C3H/HeJ	ENSMUSG00175022571	lncRNA gene	Chr9:55143422-55144308 (+)
C57BL/6NJ	ENSMUSG00215032075	lncRNA gene	Chr9:55117680-55118566 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021383	lncRNA gene	Chr9:55042088-55042973 (+)
CBA/J	ENSMUSG00210042714	lncRNA gene	Chr9:55245515-55246401 (+)
DBA/2J	ENSMUSG00185043365	lncRNA gene	Chr9:55268963-55269849 (+)
FVB/NJ	ENSMUSG00205043216	lncRNA gene	Chr9:55575026-55575918 (+)
JF1/MsJ	ENSUMUG00000048896	lncRNA gene	Chr9:55285682-55286573 (+)
LP/J	ENSMUSG00230039374	lncRNA gene	Chr9:55509303-55510189 (+)
NOD/ShiLtJ	ENSMUSG00190046511	lncRNA gene	Chr9:55336183-55337075 (+)
NZO/HlLtJ	ENSMUSG00225028689	lncRNA gene	Chr9:55554836-55555722 (+)
PWK/PhJ	ENSLUMG00010040430	lncRNA gene	Chr9:55244047-55244938 (+)
SPRET/EiJ	ENSMSPG00010029093	lncRNA gene	Chr9:56283781-56284675 (+)
WSB/EiJ	ENSIUOG00005040534	lncRNA gene	Chr9:54749237-54750123 (+)

Homology

• Gene Tree
  Gm57034
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  9
• Gene trapped
  9
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000120404 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120404	Ensembl Gene Model | MGI Sequence Detail	53068	C57BL/6J
transcript	ENSMUST00000243110	Ensembl | MGI Sequence Detail	1583	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57034:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85382	Chr9:58182721-58182731 (+)	214 bp
Tssr85383	Chr9:58182823-58182839 (+)	319 bp
Tssr85384	Chr9:58183778-58183788 (+)	1,271 bp
Tssr85385	Chr9:58186933-58186961 (+)	4,435 bp
Tssr85386	Chr9:58187353-58187370 (+)	4,850 bp