Gm57033 Gene Detail

Summary

• Symbol
  Gm57033
• Name
  predicted gene, 57033

• Feature Type
  lncRNA gene
• IDs
  MGI:7337979
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr9:64713405-64717639 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  187 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337979	lncRNA gene	Chr9:64713405-64717639 (+)
129S1/SvImJ	ENSMUSG00200043658	lncRNA gene	Chr9:61816512-61816819 (+)
A/J	ENSMUSG00195026532	lncRNA gene	Chr9:61532167-61532474 (+)
AKR/J	ENSMUSG00220041760	lncRNA gene	Chr9:61675969-61676276 (+)
BALB/cJ	ENSMUSG00180018855	lncRNA gene	Chr9:61664190-61664497 (+)
C3H/HeJ	ENSMUSG00175013533	lncRNA gene	Chr9:61665904-61666211 (+)
C57BL/6NJ	ENSMUSG00215033626	lncRNA gene	Chr9:61651270-61651577 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034279	lncRNA gene	Chr9:61561734-61562041 (+)
CBA/J	ENSMUSG00210014651	lncRNA gene	Chr9:61747285-61747592 (+)
DBA/2J	ENSMUSG00185036350	lncRNA gene	Chr9:61770916-61771223 (+)
FVB/NJ	ENSMUSG00205038173	lncRNA gene	Chr9:62095931-62096238 (+)
JF1/MsJ	ENSUMUG00000042020	lncRNA gene	Chr9:61823373-61823680 (+)
LP/J	ENSMUSG00230027476	lncRNA gene	Chr9:62015591-62015898 (+)
NOD/ShiLtJ	ENSMUSG00190024409	lncRNA gene	Chr9:61860290-61860597 (+)
NZO/HlLtJ	ENSMUSG00225046492	lncRNA gene	Chr9:62084018-62084325 (+)
PWK/PhJ	ENSLUMG00010027056	lncRNA gene	Chr9:61794057-61794364 (+)
SPRET/EiJ	ENSMSPG00010022247	lncRNA gene	Chr9:62846978-62847285 (+)
WSB/EiJ	ENSIUOG00005027726	lncRNA gene	Chr9:61258801-61259108 (+)

Homology

• Gene Tree
  Gm57033
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120828 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120828	Ensembl Gene Model | MGI Sequence Detail	4235	C57BL/6J
transcript	ENSMUST00000350535	Ensembl | MGI Sequence Detail	417	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57033:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85629	Chr9:64713358-64713361 (+)	-45 bp
Tssr85630	Chr9:64713373-64713382 (+)	-27 bp
Tssr85631	Chr9:64713384-64713440 (+)	7 bp
Tssr85632	Chr9:64713452-64713462 (+)	52 bp
Tssr85633	Chr9:64713492-64713496 (+)	89 bp