Gm57023 Gene Detail

Summary

• Symbol
  Gm57023
• Name
  predicted gene, 57023

• Feature Type
  lncRNA gene
• IDs
  MGI:7337959
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:106145018-106150517 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  289 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337959	lncRNA gene	Chr9:106145018-106150517 (-)
129S1/SvImJ	ENSMUSG00200045445	lncRNA gene	Chr9:103353227-103354669 (-)
A/J	ENSMUSG00195044776	lncRNA gene	Chr9:102578207-102579649 (-)
AKR/J	ENSMUSG00220032420	lncRNA gene	Chr9:102967637-102969079 (-)
BALB/cJ	ENSMUSG00180034565	lncRNA gene	Chr9:102894675-102896117 (-)
C3H/HeJ	ENSMUSG00175046036	lncRNA gene	Chr9:103237079-103238521 (-)
C57BL/6NJ	ENSMUSG00215042930	lncRNA gene	Chr9:103194783-103196229 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035021	lncRNA gene	Chr9:102992063-102993505 (-)
CBA/J	ENSMUSG00210046714	lncRNA gene	Chr9:103065204-103066650 (-)
DBA/2J	ENSMUSG00185044912	lncRNA gene	Chr9:103239353-103240795 (-)
FVB/NJ	ENSMUSG00205049666	lncRNA gene	Chr9:103241842-103243284 (-)
JF1/MsJ	ENSUMUG00000055016	lncRNA gene	Chr9:103052675-103054121 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190051072	lncRNA gene	Chr9:102880157-102881599 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010043416	lncRNA gene	Chr9:103001280-103002720 (-)
SPRET/EiJ	ENSMSPG00010047984	lncRNA gene	Chr9:104872778-104874206 (-)
WSB/EiJ	ENSIUOG00005046573	lncRNA gene	Chr9:102318613-102320055 (-)

Homology

• Gene Tree
  Gm57023
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120275 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120275	Ensembl Gene Model | MGI Sequence Detail	5500	C57BL/6J
transcript	ENSMUST00000242225	Ensembl | MGI Sequence Detail	1527	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57023:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr91307	Chr9:106146624-106146660 (-)	3,875 bp