Gm57019 Gene Detail

Summary

• Symbol
  Gm57019
• Name
  predicted gene, 57019

• Feature Type
  lncRNA gene
• IDs
  MGI:7337951
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:64928456-64929948 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337951	lncRNA gene	Chr9:64928456-64929948 (+)
129S1/SvImJ	ENSMUSG00200043349	lncRNA gene	Chr9:62032614-62033432 (+)
A/J	ENSMUSG00195027148	lncRNA gene	Chr9:61748150-61748968 (+)
AKR/J	ENSMUSG00220041312	lncRNA gene	Chr9:61892067-61892885 (+)
BALB/cJ	ENSMUSG00180019828	lncRNA gene	Chr9:61880291-61881109 (+)
C3H/HeJ	ENSMUSG00175012911	lncRNA gene	Chr9:61881868-61882686 (+)
C57BL/6NJ	ENSMUSG00215031473	lncRNA gene	Chr9:61867365-61868183 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033555	lncRNA gene	Chr9:61778091-61778908 (+)
CBA/J	ENSMUSG00210014473	lncRNA gene	Chr9:61963361-61964179 (+)
DBA/2J	ENSMUSG00185034166	lncRNA gene	Chr9:61987006-61987824 (+)
FVB/NJ	ENSMUSG00205036149	lncRNA gene	Chr9:62312967-62313787 (+)
JF1/MsJ	ENSUMUG00000037804	lncRNA gene	Chr9:62040963-62041785 (+)
LP/J	ENSMUSG00230027534	lncRNA gene	Chr9:62231690-62232508 (+)
NOD/ShiLtJ	ENSMUSG00190022483	lncRNA gene	Chr9:62076255-62077073 (+)
NZO/HlLtJ	ENSMUSG00225046561	lncRNA gene	Chr9:62300090-62300908 (+)
PWK/PhJ	ENSLUMG00010027362	lncRNA gene	Chr9:62010896-62011717 (+)
SPRET/EiJ	ENSMSPG00010022008	lncRNA gene	Chr9:63063045-63063854 (+)
WSB/EiJ	ENSIUOG00005028116	lncRNA gene	Chr9:61475941-61476750 (+)

Homology

• Gene Tree
  Gm57019
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120656 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120656	Ensembl Gene Model | MGI Sequence Detail	1493	C57BL/6J
transcript	ENSMUST00000244940	Ensembl | MGI Sequence Detail	1493	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57019:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85652	Chr9:64928470-64928485 (+)	22 bp
Tssr85653	Chr9:64929067-64929096 (+)	626 bp