Gm57013 Gene Detail

Summary

• Symbol
  Gm57013
• Name
  predicted gene, 57013

• Feature Type
  lncRNA gene
• IDs
  MGI:7337939
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:59393800-59410622 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  410 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337939	lncRNA gene	Chr9:59393800-59410622 (+)
129S1/SvImJ	ENSMUSG00200036156	lncRNA gene	Chr9:56512864-56514057 (+)
A/J	ENSMUSG00195041426	lncRNA gene	Chr9:56220021-56221214 (+)
AKR/J	ENSMUSG00220031177	lncRNA gene	Chr9:56369806-56370995 (+)
BALB/cJ	ENSMUSG00180019013	lncRNA gene	Chr9:56334794-56335983 (+)
C3H/HeJ	ENSMUSG00175022736	lncRNA gene	Chr9:56346675-56347868 (+)
C57BL/6NJ	ENSMUSG00215034763	lncRNA gene	Chr9:56328059-56329248 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022495	lncRNA gene	Chr9:56255560-56256749 (+)
CBA/J	ENSMUSG00210041985	lncRNA gene	Chr9:56451462-56452655 (+)
DBA/2J	ENSMUSG00185042990	lncRNA gene	Chr9:56473459-56474652 (+)
FVB/NJ	ENSMUSG00205042647	lncRNA gene	Chr9:56789301-56790490 (+)
JF1/MsJ	ENSUMUG00000050448	lncRNA gene	Chr9:56491182-56492370 (+)
LP/J	ENSMUSG00230039434	lncRNA gene	Chr9:56712445-56713638 (+)
NOD/ShiLtJ	ENSMUSG00190044033	lncRNA gene	Chr9:56543599-56544792 (+)
NZO/HlLtJ	ENSMUSG00225028716	lncRNA gene	Chr9:56761206-56762395 (+)
PWK/PhJ	ENSLUMG00010040477	lncRNA gene	Chr9:56446166-56447354 (+)
SPRET/EiJ	ENSMSPG00010028996	lncRNA gene	Chr9:57491320-57492489 (+)
WSB/EiJ	ENSIUOG00005042340	lncRNA gene	Chr9:55950940-55952133 (+)

Homology

• Gene Tree
  Gm57013
  

Sequences &
Gene Models

• All Sequences
  39

• Ensembl
  ENSMUSG00000120172 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120172	Ensembl Gene Model | MGI Sequence Detail	16823	C57BL/6J
transcript	ENSMUST00000241733	Ensembl | MGI Sequence Detail	1425	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57013:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85425	Chr9:59394028-59394050 (+)	239 bp