Gm57012 Gene Detail

Summary

• Symbol
  Gm57012
• Name
  predicted gene, 57012

• Feature Type
  lncRNA gene
• IDs
  MGI:7337937
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:47431539-47441494 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  218 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337937	lncRNA gene	Chr9:47431539-47441494 (-)
129S1/SvImJ	ENSMUSG00200018722	lncRNA gene	Chr9:44567271-44568481 (-)
A/J	ENSMUSG00195024078	lncRNA gene	Chr9:44290717-44291927 (-)
AKR/J	ENSMUSG00220040922	lncRNA gene	Chr9:44378658-44379868 (-)
BALB/cJ	ENSMUSG00180031892	lncRNA gene	Chr9:44402189-44403400 (-)
C3H/HeJ	ENSMUSG00175016930	lncRNA gene	Chr9:44414432-44415641 (-)
C57BL/6NJ	ENSMUSG00215038084	lncRNA gene	Chr9:44360973-44362182 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015852	lncRNA gene	Chr9:44349857-44351072 (-)
CBA/J	ENSMUSG00210017100	lncRNA gene	Chr9:44454438-44455647 (-)
DBA/2J	ENSMUSG00185011995	lncRNA gene	Chr9:44528721-44529931 (-)
FVB/NJ	ENSMUSG00205042174	lncRNA gene	Chr9:44768468-44769678 (-)
JF1/MsJ	ENSUMUG00000046531	lncRNA gene	Chr9:44582940-44584150 (-)
LP/J	ENSMUSG00230042122	lncRNA gene	Chr9:44822014-44823224 (-)
NOD/ShiLtJ	ENSMUSG00190025310	lncRNA gene	Chr9:44607238-44608448 (-)
NZO/HlLtJ	ENSMUSG00225044898	lncRNA gene	Chr9:44782802-44784012 (-)
PWK/PhJ	ENSLUMG00010021682	lncRNA gene	Chr9:44530858-44532068 (-)
SPRET/EiJ	ENSMSPG00010011359	lncRNA gene	Chr9:45309964-45311180 (-)
WSB/EiJ	ENSIUOG00005023340	lncRNA gene	Chr9:44026077-44027288 (-)

Homology

• Gene Tree
  Gm57012
  

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000119966 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119966	Ensembl Gene Model | MGI Sequence Detail	9956	C57BL/6J
transcript	ENSMUST00000240862	Ensembl | MGI Sequence Detail	1245	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57012:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr89368	Chr9:47441389-47441397 (-)	101 bp