Gm57009 Gene Detail

Summary

• Symbol
  Gm57009
• Name
  predicted gene, 57009

• Feature Type
  lncRNA gene
• IDs
  MGI:7337931
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr10:37015277-37017381 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  90 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337931	lncRNA gene	Chr10:37015277-37017381 (-)
129S1/SvImJ	ENSMUSG00200009176	lncRNA gene	Chr10:33861800-33863851 (-)
A/J	ENSMUSG00195018644	lncRNA gene	Chr10:34169634-34171684 (-)
AKR/J	ENSMUSG00220028220	lncRNA gene	Chr10:33848512-33850562 (-)
BALB/cJ	ENSMUSG00180017591	lncRNA gene	Chr10:34258136-34260189 (-)
C3H/HeJ	ENSMUSG00175012493	lncRNA gene	Chr10:34045812-34047859 (-)
C57BL/6NJ	ENSMUSG00215010130	lncRNA gene	Chr10:33806652-33808701 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029539	lncRNA gene	Chr10:34268628-34270662 (-)
CBA/J	ENSMUSG00210026311	lncRNA gene	Chr10:33946317-33948366 (-)
DBA/2J	ENSMUSG00185008199	lncRNA gene	Chr10:34098641-34100692 (-)
FVB/NJ	ENSMUSG00205013294	lncRNA gene	Chr10:34037743-34039804 (-)
JF1/MsJ	ENSUMUG00000039361	lncRNA gene	Chr10:33860056-33862104 (-)
LP/J	ENSMUSG00230016173	lncRNA gene	Chr10:35859366-35861417 (-)
NOD/ShiLtJ	ENSMUSG00190035085	lncRNA gene	Chr10:34223798-34225847 (-)
NZO/HlLtJ	ENSMUSG00225033563	lncRNA gene	Chr10:40117335-40119386 (-)
PWK/PhJ	ENSLUMG00010007975	lncRNA gene	Chr10:33982145-33984189 (-)
SPRET/EiJ	ENSMSPG00010021907	lncRNA gene	Chr10:34940879-34942910 (-)
WSB/EiJ	ENSIUOG00005015425	lncRNA gene	Chr10:33708126-33710175 (-)

Homology

• Gene Tree
  Gm57009
  

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000120261 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120261	Ensembl Gene Model | MGI Sequence Detail	2105	C57BL/6J
transcript	ENSMUST00000242136	Ensembl | MGI Sequence Detail	2105	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57009:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97323	Chr10:37017301-37017324 (-)	68 bp
Tssr97322	Chr10:37017271-37017285 (-)	103 bp
Tssr97321	Chr10:37016933-37016977 (-)	426 bp
Tssr97320	Chr10:37016798-37016827 (-)	568 bp
Tssr97319	Chr10:37016729-37016757 (-)	638 bp