Gm57008 Gene Detail

Summary

• Symbol
  Gm57008
• Name
  predicted gene, 57008

• Feature Type
  lncRNA gene
• IDs
  MGI:7337929
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:92996528-92996628 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  70 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337929	lncRNA gene	Chr10:92996528-92996628 (+)
129S1/SvImJ	ENSMUSG00200031010	lncRNA gene	Chr10:89501550-89501650 (+)
A/J	ENSMUSG00195022649	lncRNA gene	Chr10:89944697-89944797 (+)
AKR/J	ENSMUSG00220022275	lncRNA gene	Chr10:89512249-89512349 (+)
BALB/cJ	ENSMUSG00180033217	lncRNA gene	Chr10:89947434-89947534 (+)
C3H/HeJ	ENSMUSG00175022912	lncRNA gene	Chr10:89843414-89843514 (+)
C57BL/6NJ	ENSMUSG00215029772	lncRNA gene	Chr10:89524731-89524831 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037537	lncRNA gene	Chr10:89225512-89225614 (+)
CBA/J	ENSMUSG00210036577	lncRNA gene	Chr10:89683388-89683488 (+)
DBA/2J	ENSMUSG00185043662	lncRNA gene	Chr10:89893071-89893171 (+)
FVB/NJ	ENSMUSG00205023059	lncRNA gene	Chr10:89597964-89598064 (+)
JF1/MsJ	ENSUMUG00000023856	lncRNA gene	Chr10:91305407-91305507 (+)
LP/J	ENSMUSG00230023202	lncRNA gene	Chr10:91797832-91797932 (+)
NOD/ShiLtJ	ENSMUSG00190019027	lncRNA gene	Chr10:89932689-89932789 (+)
NZO/HlLtJ	ENSMUSG00225022523	lncRNA gene	Chr10:96047995-96048095 (+)
PWK/PhJ	ENSLUMG00010023964	lncRNA gene	Chr10:89571900-89572000 (+)
SPRET/EiJ	ENSMSPG00010010603	lncRNA gene	Chr10:91187978-91188078 (+)
WSB/EiJ	ENSIUOG00005040291	lncRNA gene	Chr10:89632138-89632238 (+)

Homology

• Gene Tree
  Gm57008
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121061 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121061	Ensembl Gene Model | MGI Sequence Detail	101	C57BL/6J
transcript	ENSMUST00000247034	Ensembl | MGI Sequence Detail	101	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57008:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95245	Chr10:92996507-92996547 (+)	-1 bp
Tssr95246	Chr10:92996549-92996576 (+)	35 bp