Gm57007 Gene Detail

Summary

• Symbol
  Gm57007
• Name
  predicted gene, 57007

• Feature Type
  lncRNA gene
• IDs
  MGI:7337927
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr10:127016110-127040579 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  523 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337927	lncRNA gene	Chr10:127016110-127040579 (+)
129S1/SvImJ	ENSMUSG00200013608	lncRNA gene	Chr10:123370006-123370799 (+)
A/J	ENSMUSG00195017080	lncRNA gene	Chr10:123834735-123835528 (+)
AKR/J	ENSMUSG00220006533	lncRNA gene	Chr10:123438623-123439416 (+)
BALB/cJ	ENSMUSG00180011947	lncRNA gene	Chr10:123825808-123826601 (+)
C3H/HeJ	ENSMUSG00175006285	lncRNA gene	Chr10:123824052-123824845 (+)
C57BL/6NJ	ENSMUSG00215024442	lncRNA gene	Chr10:123435826-123436619 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041690	lncRNA gene	Chr10:122802783-122803577 (+)
CBA/J	ENSMUSG00210009220	lncRNA gene	Chr10:123648235-123649028 (+)
DBA/2J	ENSMUSG00185027753	lncRNA gene	Chr10:123800636-123801429 (+)
FVB/NJ	ENSMUSG00205027271	lncRNA gene	Chr10:123044653-123045446 (+)
JF1/MsJ	ENSUMUG00000047082	lncRNA gene	Chr10:125095557-125096350 (+)
LP/J	ENSMUSG00230034390	lncRNA gene	Chr10:125717871-125718664 (+)
NOD/ShiLtJ	ENSMUSG00190015974	lncRNA gene	Chr10:123867159-123867952 (+)
NZO/HlLtJ	ENSMUSG00225037867	lncRNA gene	Chr10:129917903-129918696 (+)
PWK/PhJ	ENSLUMG00010010499	lncRNA gene	Chr10:123555904-123556697 (+)
SPRET/EiJ	ENSMSPG00010039372	lncRNA gene	Chr10:125506736-125507533 (+)
WSB/EiJ	ENSIUOG00005009115	lncRNA gene	Chr10:123434285-123435078 (+)

Homology

• Gene Tree
  Gm57007
  

Sequences &
Gene Models

• All Sequences
  45

• Ensembl
  ENSMUSG00000120324 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120324	Ensembl Gene Model | MGI Sequence Detail	24470	C57BL/6J
transcript	ENSMUST00000181578	Ensembl | MGI Sequence Detail	2396	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57007:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr96166	Chr10:127017677-127017706 (+)	1,582 bp
Tssr96167	Chr10:127017713-127017724 (+)	1,609 bp
Tssr96168	Chr10:127017781-127017791 (+)	1,676 bp
Tssr96169	Chr10:127023647-127023659 (+)	7,543 bp