Gm57005 Gene Detail

Summary

• Symbol
  Gm57005
• Name
  predicted gene, 57005

• Feature Type
  lncRNA gene
• IDs
  MGI:7337923
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:110966071-110970507 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  277 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337923	lncRNA gene	Chr10:110966071-110970507 (-)
129S1/SvImJ	ENSMUSG00200011424	lncRNA gene	Chr10:107383630-107388063 (-)
A/J	ENSMUSG00195008475	lncRNA gene	Chr10:107799032-107803467 (-)
AKR/J	ENSMUSG00220025019	lncRNA gene	Chr10:107380183-107384615 (-)
BALB/cJ	ENSMUSG00180025211	lncRNA gene	Chr10:107818532-107822961 (-)
C3H/HeJ	ENSMUSG00175016119	lncRNA gene	Chr10:107746962-107751394 (-)
C57BL/6NJ	ENSMUSG00215012540	lncRNA gene	Chr10:107469882-107474315 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011679	lncRNA gene	Chr10:106845348-106849797 (-)
CBA/J	ENSMUSG00210011697	lncRNA gene	Chr10:107618355-107622791 (-)
DBA/2J	ENSMUSG00185024727	lncRNA gene	Chr10:107736910-107746660 (-)
FVB/NJ	ENSMUSG00205011635	lncRNA gene	Chr10:107241709-107246144 (-)
JF1/MsJ	ENSUMUG00000010316	lncRNA gene	Chr10:109065247-109069705 (-)
LP/J	ENSMUSG00230013185	lncRNA gene	Chr10:109692931-109697363 (-)
NOD/ShiLtJ	ENSMUSG00190020674	lncRNA gene	Chr10:107845994-107850435 (-)
NZO/HlLtJ	ENSMUSG00225017792	lncRNA gene	Chr10:113947224-113951656 (-)
PWK/PhJ	ENSLUMG00010014021	lncRNA gene	Chr10:107444756-107449207 (-)
SPRET/EiJ	ENSMSPG00010005659	lncRNA gene	Chr10:109267284-109271726 (-)
WSB/EiJ	ENSIUOG00005010877	lncRNA gene	Chr10:107516849-107520692 (-)

Homology

• Gene Tree
  Gm57005
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120965 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120965	Ensembl Gene Model | MGI Sequence Detail	4437	C57BL/6J
transcript	ENSMUST00000246671	Ensembl | MGI Sequence Detail	747	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57005:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr99263	Chr10:110970502-110970512 (-)	0 bp
Tssr99262	Chr10:110967752-110967754 (-)	2,754 bp