Gm57004 Gene Detail

Summary

• Symbol
  Gm57004
• Name
  predicted gene, 57004

• Feature Type
  lncRNA gene
• IDs
  MGI:7337921
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:116749911-116751945 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  261 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337921	lncRNA gene	Chr10:116749911-116751945 (+)
129S1/SvImJ	ENSMUSG00200028013	lncRNA gene	Chr10:113160004-113161882 (+)
A/J	ENSMUSG00195023309	lncRNA gene	Chr10:113594752-113596630 (+)
AKR/J	ENSMUSG00220015202	lncRNA gene	Chr10:113168381-113170259 (+)
BALB/cJ	ENSMUSG00180017280	lncRNA gene	Chr10:113611666-113613544 (+)
C3H/HeJ	ENSMUSG00175024724	lncRNA gene	Chr10:113556582-113558460 (+)
C57BL/6NJ	ENSMUSG00215022938	lncRNA gene	Chr10:113252984-113254862 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033992	lncRNA gene	Chr10:112574198-112576128 (+)
CBA/J	ENSMUSG00210021770	lncRNA gene	Chr10:113406146-113408024 (+)
DBA/2J	ENSMUSG00185009827	lncRNA gene	Chr10:113531063-113532941 (+)
FVB/NJ	ENSMUSG00205031825	lncRNA gene	Chr10:112855636-112857514 (+)
JF1/MsJ	ENSUMUG00000020865	lncRNA gene	Chr10:114847406-114849299 (+)
LP/J	ENSMUSG00230026172	lncRNA gene	Chr10:115480513-115482391 (+)
NOD/ShiLtJ	ENSMUSG00190018289	lncRNA gene	Chr10:113656223-113658101 (+)
NZO/HlLtJ	ENSMUSG00225018034	lncRNA gene	Chr10:119734886-119736764 (+)
PWK/PhJ	ENSLUMG00010013422	lncRNA gene	Chr10:113233195-113235087 (+)
SPRET/EiJ	ENSMSPG00010016643	lncRNA gene	Chr10:115176633-115178495 (+)
WSB/EiJ	ENSIUOG00005013945	lncRNA gene	Chr10:113248011-113249927 (+)

Homology

• Gene Tree
  Gm57004
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120959 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120959	Ensembl Gene Model | MGI Sequence Detail	2035	C57BL/6J
transcript	ENSMUST00000246657	Ensembl | MGI Sequence Detail	1918	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57004:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95878	Chr10:116749906-116749925 (+)	5 bp