Gm57003 Gene Detail

Summary

• Symbol
  Gm57003
• Name
  predicted gene, 57003

• Feature Type
  lncRNA gene
• IDs
  MGI:7337919
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:58281910-58282847 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  76 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337919	lncRNA gene	Chr10:58281910-58282847 (-)
129S1/SvImJ	ENSMUSG00200028728	lncRNA gene	Chr10:54951381-54951482 (-)
A/J	ENSMUSG00195028530	lncRNA gene	Chr10:55245799-55245900 (-)
AKR/J	ENSMUSG00220042358	lncRNA gene	Chr10:54934429-54934530 (-)
BALB/cJ	ENSMUSG00180028105	lncRNA gene	Chr10:55301206-55301307 (-)
C3H/HeJ	ENSMUSG00175026450	lncRNA gene	Chr10:55158774-55158875 (-)
C57BL/6NJ	ENSMUSG00215032045	lncRNA gene	Chr10:54899003-54899104 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030299	lncRNA gene	Chr10:54965718-54965819 (-)
CBA/J	ENSMUSG00210037798	lncRNA gene	Chr10:55037101-55037202 (-)
DBA/2J	ENSMUSG00185043151	lncRNA gene	Chr10:55380781-55380882 (-)
FVB/NJ	ENSMUSG00205035559	lncRNA gene	Chr10:55020145-55020246 (-)
JF1/MsJ	ENSUMUG00000022634	lncRNA gene	Chr10:56594194-56594295 (-)
LP/J	ENSMUSG00230023854	lncRNA gene	Chr10:57181880-57181981 (-)
NOD/ShiLtJ	ENSMUSG00190036981	lncRNA gene	Chr10:55364433-55364534 (-)
NZO/HlLtJ	ENSMUSG00225022742	lncRNA gene	Chr10:61468040-61468141 (-)
PWK/PhJ	ENSLUMG00010024449	lncRNA gene	Chr10:54954562-54954663 (-)
SPRET/EiJ	ENSMSPG00010027591	lncRNA gene	Chr10:56567509-56567610 (-)
WSB/EiJ	ENSIUOG00005042009	lncRNA gene	Chr10:54925648-54925749 (-)

Homology

• Gene Tree
  Gm57003
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120958 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120958	Ensembl Gene Model | MGI Sequence Detail	938	C57BL/6J
transcript	ENSMUST00000246654	Ensembl | MGI Sequence Detail	938	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57003:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97639	Chr10:58283199-58283253 (-)	-379 bp
Tssr3207	Chr10:58282499-58282548 (-)	323 bp