Gm56999 Gene Detail

Summary

• Symbol
  Gm56999
• Name
  predicted gene, 56999

• Feature Type
  lncRNA gene
• IDs
  MGI:7337911
• Alliance
  genome feature page
• Transcription Start Sites
  28 TSS

Location &
Maps

• Sequence Map
  Chr6:30782677-30785779 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  84 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337911	lncRNA gene	Chr6:30782677-30785779 (+)
129S1/SvImJ	ENSMUSG00200035243	lncRNA gene	Chr6:27834320-27837413 (+)
A/J	ENSMUSG00195009457	lncRNA gene	Chr6:27796949-27800043 (+)
AKR/J	ENSMUSG00220003774	lncRNA gene	Chr6:27390039-27393132 (+)
BALB/cJ	ENSMUSG00180024510	lncRNA gene	Chr6:27928589-27931684 (+)
C3H/HeJ	ENSMUSG00175019208	lncRNA gene	Chr6:27791752-27794845 (+)
C57BL/6NJ	ENSMUSG00215028642	lncRNA gene	Chr6:27835155-27838248 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027989	lncRNA gene	Chr6:27385493-27388573 (+)
CBA/J	ENSMUSG00210004915	lncRNA gene	Chr6:27812914-27816007 (+)
DBA/2J	ENSMUSG00185022186	lncRNA gene	Chr6:27907480-27910574 (+)
FVB/NJ	ENSMUSG00205032805	lncRNA gene	Chr6:27882038-27885131 (+)
JF1/MsJ	ENSUMUG00000035083	lncRNA gene	Chr6:27616939-27620026 (+)
LP/J	ENSMUSG00230030377	lncRNA gene	Chr6:28850851-28853944 (+)
NOD/ShiLtJ	ENSMUSG00190031689	lncRNA gene	Chr6:27676545-27679638 (+)
NZO/HlLtJ	ENSMUSG00225014558	lncRNA gene	Chr6:30811862-30814955 (+)
PWK/PhJ	ENSLUMG00010025767	lncRNA gene	Chr6:27385686-27388768 (+)
SPRET/EiJ	ENSMSPG00010023392	lncRNA gene	Chr6:27811472-27814602 (+)
WSB/EiJ	ENSIUOG00005033612	lncRNA gene	Chr6:27984892-27987991 (+)

Homology

• Gene Tree
  Gm56999
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121179 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121179	Ensembl Gene Model | MGI Sequence Detail	3103	C57BL/6J
transcript	ENSMUST00000247397	Ensembl | MGI Sequence Detail	3103	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56999:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55419	Chr6:30781035-30781044 (+)	-1,637 bp
Tssr55420	Chr6:30781120-30781144 (+)	-1,545 bp
Tssr55421	Chr6:30781233-30781246 (+)	-1,437 bp
Tssr55422	Chr6:30781730-30781752 (+)	-936 bp
Tssr55423	Chr6:30781754-30781759 (+)	-920 bp
Tssr55424	Chr6:30781769-30781776 (+)	-904 bp
Tssr55425	Chr6:30781813-30781822 (+)	-859 bp
Tssr55426	Chr6:30781835-30781849 (+)	-835 bp
Tssr55427	Chr6:30781884-30781900 (+)	-785 bp
Tssr55428	Chr6:30781905-30781915 (+)	-767 bp
Tssr55429	Chr6:30781918-30781941 (+)	-747 bp
Tssr1805	Chr6:30781945-30781950 (+)	-729 bp
Tssr55430	Chr6:30781966-30781979 (+)	-704 bp
Tssr55431	Chr6:30782001-30782015 (+)	-669 bp
Tssr55432	Chr6:30782100-30782111 (+)	-571 bp
Tssr55433	Chr6:30782121-30782130 (+)	-551 bp
Tssr55434	Chr6:30782137-30782147 (+)	-535 bp
Tssr55435	Chr6:30782362-30782377 (+)	-307 bp
Tssr55436	Chr6:30782392-30782402 (+)	-280 bp
Tssr55437	Chr6:30782470-30782481 (+)	-201 bp
Tssr55438	Chr6:30782545-30782559 (+)	-125 bp
Tssr55439	Chr6:30782592-30782601 (+)	-80 bp
Tssr55440	Chr6:30782674-30782693 (+)	7 bp
Tssr55441	Chr6:30783152-30783172 (+)	485 bp
Tssr55442	Chr6:30783245-30783263 (+)	577 bp
Tssr55443	Chr6:30783330-30783344 (+)	660 bp
Tssr55444	Chr6:30783428-30783451 (+)	763 bp
Tssr55445	Chr6:30783478-30783518 (+)	821 bp