Gm56998 Gene Detail

Summary

• Symbol
  Gm56998
• Name
  predicted gene, 56998

• Feature Type
  lncRNA gene
• IDs
  MGI:7337909
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:59710931-59711408 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337909	lncRNA gene	Chr10:59710931-59711408 (-)
129S1/SvImJ	ENSMUSG00200029885	lncRNA gene	Chr10:56375153-56375630 (-)
A/J	ENSMUSG00195028140	lncRNA gene	Chr10:56674929-56675406 (-)
AKR/J	ENSMUSG00220043080	lncRNA gene	Chr10:56379762-56380239 (-)
BALB/cJ	ENSMUSG00180027343	lncRNA gene	Chr10:56729943-56730420 (-)
C3H/HeJ	ENSMUSG00175025912	lncRNA gene	Chr10:56582483-56582960 (-)
C57BL/6NJ	ENSMUSG00215033244	lncRNA gene	Chr10:56328091-56328568 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029932	lncRNA gene	Chr10:56369471-56369948 (-)
CBA/J	ENSMUSG00210039138	lncRNA gene	Chr10:56460804-56461281 (-)
DBA/2J	ENSMUSG00185043003	lncRNA gene	Chr10:56807567-56808044 (-)
FVB/NJ	ENSMUSG00205035870	lncRNA gene	Chr10:56479924-56480401 (-)
JF1/MsJ	ENSUMUG00000023247	lncRNA gene	Chr10:58042774-58043251 (-)
LP/J	ENSMUSG00230023608	lncRNA gene	Chr10:58610805-58611282 (-)
NOD/ShiLtJ	ENSMUSG00190037588	lncRNA gene	Chr10:56793409-56793886 (-)
NZO/HlLtJ	ENSMUSG00225045722	lncRNA gene	Chr10:62891695-62892172 (-)
PWK/PhJ	ENSLUMG00010023861	lncRNA gene	Chr10:56397268-56397745 (-)
SPRET/EiJ	ENSMSPG00010026284	lncRNA gene	Chr10:57979079-57979552 (-)
WSB/EiJ	ENSIUOG00005041395	lncRNA gene	Chr10:56358602-56359079 (-)

Homology

• Gene Tree
  Gm56998
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120935 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120935	Ensembl Gene Model | MGI Sequence Detail	478	C57BL/6J
transcript	ENSMUST00000246561	Ensembl | MGI Sequence Detail	478	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56998:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97678	Chr10:59711406-59711410 (-)	0 bp