Gm56997 Gene Detail

Summary

• Symbol
  Gm56997
• Name
  predicted gene, 56997

• Feature Type
  lncRNA gene
• IDs
  MGI:7337907
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:149210343-149211173 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  16 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337907	lncRNA gene	Chr6:149210343-149211173 (-)
129S1/SvImJ	ENSMUSG00200004105	lncRNA gene	Chr6:146731386-146732216 (-)
A/J	ENSMUSG00195003876	lncRNA gene	Chr6:145638025-145638855 (-)
AKR/J	ENSMUSG00220012654	lncRNA gene	Chr6:143909491-143910321 (-)
BALB/cJ	ENSMUSG00180002616	lncRNA gene	Chr6:145765069-145765899 (-)
C3H/HeJ	ENSMUSG00175002541	lncRNA gene	Chr6:145705756-145706586 (-)
C57BL/6NJ	ENSMUSG00215003834	lncRNA gene	Chr6:145867795-145868625 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010967	lncRNA gene	Chr6:146506649-146507479 (-)
CBA/J	ENSMUSG00210005179	lncRNA gene	Chr6:145778702-145779532 (-)
DBA/2J	ENSMUSG00185016259	lncRNA gene	Chr6:146407684-146408514 (-)
FVB/NJ	ENSMUSG00205000058	lncRNA gene	Chr6:144751519-144752349 (-)
JF1/MsJ	ENSUMUG00000015071	lncRNA gene	Chr6:145055713-145056542 (-)
LP/J	ENSMUSG00230005639	lncRNA gene	Chr6:147504816-147505646 (-)
NOD/ShiLtJ	ENSMUSG00190002382	lncRNA gene	Chr6:146253919-146254749 (-)
NZO/HlLtJ	ENSMUSG00225013763	lncRNA gene	Chr6:150412438-150413268 (-)
PWK/PhJ	ENSLUMG00010002387	lncRNA gene	Chr6:144126823-144127653 (-)
SPRET/EiJ	ENSMSPG00010017186	lncRNA gene	Chr6:148087513-148088343 (-)
WSB/EiJ	ENSIUOG00005005074	lncRNA gene	Chr6:146479001-146479831 (-)

Homology

• Gene Tree
  Gm56997
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121190 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121190	Ensembl Gene Model | MGI Sequence Detail	831	C57BL/6J
transcript	ENSMUST00000247418	Ensembl | MGI Sequence Detail	831	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56997:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr64180	Chr6:149211154-149211183 (-)	4 bp
Tssr64179	Chr6:149211131-149211148 (-)	33 bp