Gm56994 Gene Detail

Summary

• Symbol
  Gm56994
• Name
  predicted gene, 56994

• Feature Type
  lncRNA gene
• IDs
  MGI:7337901
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:119075425-119077131 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  106 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337901	lncRNA gene	Chr10:119075425-119077131 (+)
129S1/SvImJ	ENSMUSG00200026694	lncRNA gene	Chr10:115426752-115427160 (+)
A/J	ENSMUSG00195022027	lncRNA gene	Chr10:115826917-115827325 (+)
AKR/J	ENSMUSG00220014836	lncRNA gene	Chr10:115457473-115457881 (+)
BALB/cJ	ENSMUSG00180016889	lncRNA gene	Chr10:115839568-115839976 (+)
C3H/HeJ	ENSMUSG00175024940	lncRNA gene	Chr10:115844212-115844620 (+)
C57BL/6NJ	ENSMUSG00215021498	lncRNA gene	Chr10:115484902-115485310 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032220	lncRNA gene	Chr10:114818985-114819393 (+)
CBA/J	ENSMUSG00210021592	lncRNA gene	Chr10:115681100-115681508 (+)
DBA/2J	ENSMUSG00185009216	lncRNA gene	Chr10:115791011-115791419 (+)
FVB/NJ	ENSMUSG00205030843	lncRNA gene	Chr10:115090092-115090500 (+)
JF1/MsJ	ENSUMUG00000020075	lncRNA gene	Chr10:117054481-117054889 (+)
LP/J	ENSMUSG00230025631	lncRNA gene	Chr10:117753553-117753961 (+)
NOD/ShiLtJ	ENSMUSG00190018528	lncRNA gene	Chr10:115892981-115893389 (+)
NZO/HlLtJ	ENSMUSG00225019188	lncRNA gene	Chr10:121999410-121999818 (+)
PWK/PhJ	ENSLUMG00010014263	lncRNA gene	Chr10:115469266-115469674 (+)
SPRET/EiJ	ENSMSPG00010016253	lncRNA gene	Chr10:117384937-117385338 (+)
WSB/EiJ	ENSIUOG00005013837	lncRNA gene	Chr10:115511002-115511410 (+)

Homology

• Gene Tree
  Gm56994
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120839 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120839	Ensembl Gene Model | MGI Sequence Detail	1707	C57BL/6J
transcript	ENSMUST00000246060	Ensembl | MGI Sequence Detail	1707	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56994:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95957	Chr10:119076223-119076235 (+)	804 bp