Gm56988 Gene Detail

Summary

• Symbol
  Gm56988
• Name
  predicted gene, 56988

• Feature Type
  lncRNA gene
• IDs
  MGI:7337889
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:88051726-88052576 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337889	lncRNA gene	Chr6:88051726-88052576 (+)
129S1/SvImJ	ENSMUSG00200045799	lncRNA gene	Chr6:84995408-84995608 (+)
A/J	ENSMUSG00195041779	lncRNA gene	Chr6:84698753-84698953 (+)
AKR/J	ENSMUSG00220035688	lncRNA gene	Chr6:83600017-83600217 (+)
BALB/cJ	ENSMUSG00180019928	lncRNA gene	Chr6:85072658-85072858 (+)
C3H/HeJ	ENSMUSG00175040413	lncRNA gene	Chr6:92326080-92326280 (-)
C57BL/6NJ	ENSMUSG00215035526	lncRNA gene	Chr6:85082165-85082365 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018290	lncRNA gene	Chr6:85002096-85002296 (+)
CBA/J	ENSMUSG00210046544	lncRNA gene	Chr6:84894020-84894220 (+)
DBA/2J	ENSMUSG00185046214	lncRNA gene	Chr6:85441357-85441557 (+)
FVB/NJ	ENSMUSG00205044279	lncRNA gene	Chr6:84067550-84067750 (+)
JF1/MsJ	ENSUMUG00000050885	lncRNA gene	Chr6:84365707-84365906 (+)
LP/J	ENSMUSG00230050503	lncRNA gene	Chr6:86576156-86576356 (+)
NOD/ShiLtJ	ENSMUSG00190043360	lncRNA gene	Chr6:84513194-84513394 (+)
NZO/HlLtJ	ENSMUSG00225021161	lncRNA gene	Chr6:88533723-88533923 (+)
PWK/PhJ	ENSLUMG00010035478	lncRNA gene	Chr6:83789625-83789826 (+)
SPRET/EiJ	ENSMSPG00010045676	lncRNA gene	Chr6:85930681-85930881 (+)
WSB/EiJ	ENSIUOG00005035253	lncRNA gene	Chr6:85420474-85420674 (+)

Homology

• Gene Tree
  Gm56988
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121170 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121170	Ensembl Gene Model | MGI Sequence Detail	851	C57BL/6J
transcript	ENSMUST00000247373	Ensembl | MGI Sequence Detail	851	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56988:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57566	Chr6:88052347-88052379 (+)	637 bp